Basic Information

Gene Symbol
stc
Assembly
GCA_945859635.1
Location
CAMAOE010000118.1:76102-80619[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 2.4e+04 -4.3 1.6 15 19 552 556 551 556 0.81
2 14 0.064 7.6e+02 0.7 0.2 4 10 585 591 584 592 0.95
3 14 6.2e-06 0.073 13.5 13.8 3 19 600 616 599 616 0.91
4 14 8.8e-07 0.01 16.2 17.9 1 18 652 669 652 670 0.97
5 14 3.1e-08 0.00037 20.8 9.2 1 19 708 726 708 726 0.98
6 14 1.3e-06 0.016 15.6 13.2 4 18 773 787 766 788 0.86
7 14 2 2.4e+04 -4.6 1.6 5 10 817 822 817 822 0.90
8 14 0.00054 6.4 7.3 8.4 1 11 828 838 828 839 0.97
9 14 1.1 1.3e+04 -3.2 0.7 4 10 843 849 842 849 0.87
10 14 3.9e-10 4.7e-06 26.9 12.6 1 19 855 873 855 873 0.98
11 14 0.25 2.9e+03 -1.2 1.7 5 10 901 906 895 907 0.90
12 14 2 2.4e+04 -6.8 9.9 10 19 920 930 909 930 0.76
13 14 5.9e-08 0.0007 20.0 12.3 1 16 966 981 966 992 0.85
14 14 7.4e-06 0.088 13.2 13.6 1 19 998 1017 998 1017 0.97

Sequence Information

Coding Sequence
ATGGCCACATGGGATGGTTCTGATTCTAAACCAGAAGACCAAAATTATTATACGTATTTCAATCAAAATGTTGCTGATTCCGCAACAGGAACATGGACATATTTTCCCAGCCATGTGAATAATGAATGTTTACAATCTAATCGTGAATATTATGTACAAAATGAACCTTTATATGAGCCCAATGGCCCAAATACTTCCTATCGTACGAACACGGATGGTTGGCCAATTCCATCTGTGACCAATCTTTATCAGAAACATGTAATGAGCATAGTAGGTAATACTCAGGCATCAAGTAACCCAAAATGTTTTACAAATACTCAACGAAGTTTTGCATCTGAAAACTGTTGGAAGGATGATTACAATTCAGGAATAACCAAAACTAAACGCAATTCTGTGGAGAAAATGAAGAAGCCAAGTAATTTAAATCTTCATGTTACGGCTGAAGAATTTGTGCCAAATAATATAGAATTGAATGATAAAAGATGCGAATTACAAAATACAAAATCTGTTAGTACCATAGATTCTGTCAAAAATAATAATGAAACATTAAATAAACAGACATTTTATAATACAAACAGGCTTGAAAGAAAATATAATACTAAAAAAAATGCAAATTATAAACCTAGAGAAGGACAACAAGATCACTTTTATAAGCGAAATACGTATAAAAATTCTTCTCAGCAACAAGGGAGAACTTCTCATAAATTTCAAGGTAATAAGTATGTTACTAATAAATATTACTCGGATAAACCACAAATAGATATAAAAAGCATAGATGAAAATATGCTAGATAAAGAAACGATGAATGATAATAGTGGCTGTAAAAGTAATGAATTTTCTACAACAAATTTAAATGGGAGAGAATTATCTTTAAATATGGAAACAAATTTGAATAATGATAAACAGATTTTAAACAGAGGCAGTGATGAACAGTCTTCTACTGTTAGAAATGAAAACATGCAAGAAAGTGATACAAAGCAGTATAATAATCAGATTAAGGAACTTGCTTACTATAATTCTGGTTCAAAACAGTTTCATAATAATCGTAGAACTACAAAGAAGTATTCATATAATGTTAAATACAACAGAGAAGAAAGCACCTTTAAAGAAAAGAAACGGAATTATCAAGGATATAATAGAGAAAATTACAGTAAAGAGCATAAATTTAAGGTAAAGGAGCAAACGTATAGCAATGGTGAACATAATGAGTTTAAAGAGTGTTATGAGAAGGAAAGCGGATTCGAAGCAAAGGAAATAAAAGAAAAAAAGTATAATTATCAAGGATTTAATGAGCCAAAAGAATATAATAAAGAAAACAAAAATGAGATATTTAAAGATAAAGACAGAAGTAAAAGTTATGTATTTGAAAATAATGACAAAGGAAATGAACATTGGAGTAACAAAAGGGAAAGTAGTGAAAGGAGTAGTATTCAAAAATGGGGGAAAAATAAAAGATCTCTTGTTGATGACGATGCAAATCAAAGAGAGAGATTAGCAGATCAACTAAGTAGAGGACAGTTGGAATGTTTAGTGTGTTGCGAATACATTAAACAGAATGATTATATTTGGTCATGTTCTAATTGCTTCCACGTTTTACATTTAAAATGTATTAAGAAATGGGCAAAATCGTCGCAAGTGGAAAATGGTTGGAGATGCCCAGCGTGTCAAAATATGAGTATAACAATTCCTGAAAACTGTTTTTGTTTTTGTGGCAAAACAAAAGCACCTGAATGGAATCGTAGAGATGTTGCGCATTCTTGCGGTGAAGTTTGTGGTAGAGTACTATCAAAAAATTGTACGCATAAGTGTACTCTTTTGTGCCATCCAGGGTCTTGTCCACAATGTACAGCAATGGTAACAAAGTATTGTGGTTGCGGTAAAACATCGCAAACGGTACAGTGCAGTGCCCATAAGTTACTGTTATGTGATTCTACATGTGATAAGGATTTAAATTGTGGTAAGCACAAATGCGAAAGGCGATGTCATCATGGAGAATGTGGAAATTGTGAGAAAACAATAGTGCAAAGATGTTATTGTGGTAAAAATACCAGAGAAGTAACATGTCAGAGCAATATTTCTCTTACTTATTCTTGTCAAACTACTTGTAATAAATTATTAGAATGTGGTAATCATACTTGTACAAAGTTATGCCATGCTGATGCTTGCGAGTCTTGTTCTTTAACCCCAGAAAAAATTACAACTTGTTGCTGCGGACAAACGCCGTTAACAGAAAAGAGACAAAGTTGCTTAGATCCAGTTCCAGTTTGTGATAAAGTATGTTCTAAAAAACTAAAATGTGGACAACCTAGTAACCCTCATACTTGTAAAGCAAAATGTCATCAAGGAGATTGCCCTACTTGCGATTTAACTACAGATGTCAAATGTCGTTGCGGAAATATGGACAGAGAAATAGCTTGCAAAGACTTAACGTCAAAAGCTGACGATGCTCGGTGTGAAAAAAGATGTACAAAGAAAAGATCTTGTGGCAAGCATAAATGTAATCAGTTATGTTGCATAGAAATAGAACATGTTTGTCCATTGGTGTGTTCCAAAACTTTAAGTTGTGGTAGACATAAATGTGAACAAAGTTGTCATAAAGGAAGATGTCAGTCTTGTTGGCATAGTAGCTTTGATGAATTATATTGTGAATGTGGTGCTGCTGTAATATATCCTCCTGTCCCTTGTGGTACAAGAAGACCTACTTGTGAAAGGCCATGTTCGCGTCAGCACTCGTGTGGACATGAAGTTCTACATAATTGTCACAGTGAATCAACATGTCCTCCTTGCACTGTACTTACTCAGAGATGGTGCCATGGTAAACATGAACTTAGAAAAGCTGTCCCGTGTTATGTTACTGAAATTTCATGTGGTTTGCCATGTAATAAACCTATATCATGCGGTCGGCATAAGTGTATTAGTATCTGTCATTCTGGTCCATGTGAAAAACCAGGACAACAATGTTCACAACCTTGCACTAATCCTAGGGAAATGTGTGGTCACATCTGTGCAGCTCCGTGTCACGAGGGTAAATGCCCGGATACTCCGTGTAAGGAGATGGTAAAGgtaacatgtcaatgtggacatagatctatgtctcgtTGGGCTAAGAAGAACCCACAGTTTTGTCAAATGGTTCATGATAAATTAACAGAGTTAGTTCAACTAGCAAAAACTTCGAAACAGAAATCTCGTAGTTACTCTTTTGATTGTATGAACAAAGATAAGCGTCATTTTGTTCATGAATCTTGTGAACATTTTGGCTGTGAAAGTCAGGCATATGATCAAGAACCGAAAAGAAATGTTGTTGCTACTGCTGTAAAAGATAAGtgttggttaccaagctacagtttattagaaatcgtgcaacgagaaaatggtcaaagaaaagttccaggtccaatgctgaataccTTAAAAACCGATGGACCTGTAAAAACAATATTATCACTGCCTACACAAAGAAGTCAAAAACCAGAAATACAGTCCACCGTGAAGACAGCTGAACCAGAAATAGATTACTTTGATTATCATGGTTAA
Protein Sequence
MATWDGSDSKPEDQNYYTYFNQNVADSATGTWTYFPSHVNNECLQSNREYYVQNEPLYEPNGPNTSYRTNTDGWPIPSVTNLYQKHVMSIVGNTQASSNPKCFTNTQRSFASENCWKDDYNSGITKTKRNSVEKMKKPSNLNLHVTAEEFVPNNIELNDKRCELQNTKSVSTIDSVKNNNETLNKQTFYNTNRLERKYNTKKNANYKPREGQQDHFYKRNTYKNSSQQQGRTSHKFQGNKYVTNKYYSDKPQIDIKSIDENMLDKETMNDNSGCKSNEFSTTNLNGRELSLNMETNLNNDKQILNRGSDEQSSTVRNENMQESDTKQYNNQIKELAYYNSGSKQFHNNRRTTKKYSYNVKYNREESTFKEKKRNYQGYNRENYSKEHKFKVKEQTYSNGEHNEFKECYEKESGFEAKEIKEKKYNYQGFNEPKEYNKENKNEIFKDKDRSKSYVFENNDKGNEHWSNKRESSERSSIQKWGKNKRSLVDDDANQRERLADQLSRGQLECLVCCEYIKQNDYIWSCSNCFHVLHLKCIKKWAKSSQVENGWRCPACQNMSITIPENCFCFCGKTKAPEWNRRDVAHSCGEVCGRVLSKNCTHKCTLLCHPGSCPQCTAMVTKYCGCGKTSQTVQCSAHKLLLCDSTCDKDLNCGKHKCERRCHHGECGNCEKTIVQRCYCGKNTREVTCQSNISLTYSCQTTCNKLLECGNHTCTKLCHADACESCSLTPEKITTCCCGQTPLTEKRQSCLDPVPVCDKVCSKKLKCGQPSNPHTCKAKCHQGDCPTCDLTTDVKCRCGNMDREIACKDLTSKADDARCEKRCTKKRSCGKHKCNQLCCIEIEHVCPLVCSKTLSCGRHKCEQSCHKGRCQSCWHSSFDELYCECGAAVIYPPVPCGTRRPTCERPCSRQHSCGHEVLHNCHSESTCPPCTVLTQRWCHGKHELRKAVPCYVTEISCGLPCNKPISCGRHKCISICHSGPCEKPGQQCSQPCTNPREMCGHICAAPCHEGKCPDTPCKEMVKVTCQCGHRSMSRWAKKNPQFCQMVHDKLTELVQLAKTSKQKSRSYSFDCMNKDKRHFVHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEIVQRENGQRKVPGPMLNTLKTDGPVKTILSLPTQRSQKPEIQSTVKTAEPEIDYFDYHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01122771;
90% Identity
-
80% Identity
-