Mlea006305.1
Basic Information
- Insect
- Megachile leachella
- Gene Symbol
- -
- Assembly
- GCA_963576845.1
- Location
- OY756248.1:4030540-4036435[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0022 0.32 12.5 1.6 1 23 694 716 694 716 0.97 2 11 0.00032 0.048 15.0 0.0 3 23 805 825 803 825 0.95 3 11 0.22 33 6.1 0.2 3 23 1043 1063 1042 1063 0.96 4 11 4.1 6.1e+02 2.1 0.5 1 10 1074 1083 1074 1085 0.91 5 11 0.00072 0.11 14.0 0.5 1 20 1134 1153 1134 1155 0.95 6 11 0.2 29 6.3 1.3 3 23 1184 1205 1182 1205 0.95 7 11 7.9 1.2e+03 1.2 0.0 1 23 1225 1247 1225 1247 0.93 8 11 3.6 5.4e+02 2.3 2.1 1 12 1254 1265 1254 1268 0.91 9 11 0.071 11 7.7 1.8 1 19 1297 1315 1297 1319 0.93 10 11 0.14 22 6.7 0.1 1 23 1886 1911 1886 1911 0.96 11 11 0.054 8.1 8.0 1.7 1 23 1913 1935 1913 1935 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGTACTgacaaagaaataaataatctaCATTCAGACCTTGGTGATTGTTCTTCTAAACCAGTAAATGAATCGACATTGTTACAACAGAATGAGCAATCTAACAGTAACAGAAATTTTCGTTTGACTACCTTAAGAAAAAGATCAGTTATAAATATCAATATGAAAGGGTCATCAAAAGCCAGAAACATAGAAGCTTTGCATAGATTGCTATGTAAACCATTGTCTATAAATGTCACCAGATTACCAGTGTCAGAGttacaaaaaatatcaaaagtacAACATAAAATACAGAACAATGAAAGAAGTATAAGTCAGATAGGAATAAGAAACAGAGTAAGAGGTAAGAGAAGACAGGCTTATGGTTggaaacatataaaaaaatcTGCTAAACCTCAATCTGCATCATCTTGTCAAACAATAGTATCCAATAATTTAGATTTAAGCTCACAGGATTCACCAGAAAGTGTTAAAGAGCCATATATAAAATTACGCAGAATAGATGAAGTAATCCATAAAATAGCACAAACATTTGCAAAAGTAATCCCAAATAAAGTATGTAATGCAAGGGCACACACAGATCAAACAGAAAAAGACCATACTATAGCAAATGGATCAAAGGAAGTAGTATCAGAACCATCAGACATTGATACAGATGAacgtattcaaaataataattctccaatttcaacaTCTAGTccagatataaatgaaactttacAATTAAATGATCAGTTCCAAAATGAGGTAGAGGACTCTGACAGTATTGAAATTAACAGAAATGCATGTAATAGAAACTTTAAAAGAAAACGTAAAATTCTATTTGATTCTGATGATGAGTCTGATAGTAATACTAATAATGTGAGTGGCAATTTGCAAGAAATTAGTTCAAGaagtattaaaatgttaaaattacatACACCAGAAAAGAAAACAGAAAATTATGTTGCTGACAAAGAACACAGTGATCATGAGGAGAatacaattaacacaaattCAAGCATTACAATTAAGAATGTCAATGATTCATACGAGAATTTAAATGTTATCGAAAATGTATCTCCAAAATCACATGAAAGTAATATTAGAAAAAGGATAACACGGCAACAAAATAATGCTTCCACTTTTGTGCCTTTGGATGTTATATGTGCTGAAGAAAGAAATGAAcatgaaatgttaaaatatgaTACTGTTGCAGGTGCAAAAGAGCAAACATTAAGTAATGAAGAATTTCAAAGTCAAATCACGAAATCATCTATTTCACATGAaagtctgaaaataaaatacaacttGCTTAAGAACTTAAGAGTTTATTTGATACAGCTTGATCATATAAAACACTCTAGAGATAACAAATACTCAGCTTTAGAAATAGAGCAGTTAACAAGAAAATATATGgaacttttaaataattctgaatttgagagtgtgaaaTTATCCTTAATTACTGAAGAAATGGAAGATACACAAAATgctgaaattttaaatacaaatgcGAGCAAGCTTACaaagaatattgaaataaaacagaagaaaatttCAGATAATGTTGCTGAAGAAATGTCAGAATTGGATACTTCTGTTCATTCAGAGCAACCATCAACTCCATTAGTTTGTACGGAACATGCATTGCCATCTTCTCCAGTGAAATCTAGTACTAGAATTTCTAAAGCATCCCGTGTGACTGAACATGTCATTAAGACAGAGAAGTTAAAAGATAGATTGCATAGTTCTATGACGAGATCTACTAATGAAAAACATTCTCCAAATAAAGAATCATCAAAAACATCAATACGTAAAAGCAGTCCTAAAAAATCAAGTAAGAATATAGAATCTTTAGGAAGTATACAAGCTGATACGTGTGAAATGATATTTTCTGAAAAACCTGTTGTAACTCATAATGAAAAAGTTCTTGTCTCTGGAAGAAAGACGTTTGTAACTAAAATACATGCAAAAACTGTGAATATCATAAATCCTAAAGTAAATacgaaaaaaaatattacatccTGCTCCTCAATCATTTCTCCAGTTAAAAAGAAACCTGTGGAGAAGaaagataatagtaaaagtattaattacaaatgtatTGTCTGTGATCTTCGTTTTGAAAATTATTCTGCTTTACAACACCATTTAACTACGCACACACAGAAGCAAAGTAATGTTCTACCAAATACATCAAAAGAATCTGCTACAATTCAAACTGACAGTTCTGAGGATATTCAAGAAGCATTACTTCATTCTCCAGAAGCAGCAGACTCAGCAGAATCGTCTAGACAAACACACAACACTAAAAGAAGTAAACAACAAAGTAAGGGTACTTCAACCCAAGACTTACAACCTAAGAAGAGAAGTTATTTTTCAAAGCAACGATCTAAGTTTATGAATATGCTTTGTAAACCAACTGCTTGTGATATTTGTTCTAAAGTTTTTCCAACAGCAACTGATTTAGCAGCTCATATTTTCTTGCATACAGAATATGAATTGCAAAAAGCTTATGAGCTTGCCAAACACAAGAAAAGTAATGTAAATGAAGAAACAAAGAGTAAAAAGTCTAAACAAACTAAAAATACTAAAGAGCTTGACAATGAAAGTAAGACAAATCTTATAGTAGAGAAGTCTGCAGAGGTTGTTAACGAACAAGAAAAATTAACAACTGCAATGGATCACAATGAATCATTATCAACTGAAGATTTGAAGGTAACACATTCTGAAAAATCAACAACATTACCAACAACAATACCAATTGCAACAGCATCATCAACAATATCAACAGTAATACAACCATCATTGCCACTagtaacagcagcagcagcaacaacaacaataacaacagcAACATCAACATCAGTTGTGAACGAAACAAGTTCTGAAGGATTACAATCGCATTCAACTGAAAGTAAATCAGAAAAAGGAAAGACAAAGAAATCCTTTAAAATATGTGAATGTCATGGTAAATTAGAACCTGATAACAATTGCTTGCAAATTGAAATGGTTCTCCTTTGTCATACCTGTAAAGTGCTGTTTCGAAGCATGGAATGTTTTGATACTCATTATGATCTTCCTGAGTATGAACTCTGCGGTAAAAATCGTGGTAATCGAAGCAGAACTCCAAATATATTGTGTGCTGTGTGCGGTATAATATTCAACTCTGTTCAAGAGGTACGACATCATTTAGAAAACCATGCTCGCGTCAGACAAAGTTGTACATTGGATTTTCGatgtaaaatttgcaaagttgtaTTTATTGGAATTGGAGCTCAATTTTACGTTCATTGGTCAAAACATTTACAAGATCCTTATTGGAAAGCTGATGAATCAGCATTTCCAGTACATTCAGTGGTAAATGTACTAAATCAGAACAAAGAAGCAGAAAATTATCTTCAAATAGCAGAATATATTTgttcaaaatgtaaaataccTTTTATTACTGAAAGTGATTTGAAAAGACATCATGTAAAATGCAAGATGTCAAATTCAAATACAAATGGAACTAGTAGTAACAGTAATACTAATGTGGAGAAATCTTTAGAAATAGAAGTGAATTGTAGTTTATGCAATGATGTTTTTACTGAAAAAACAACATTTTATAAACACGTCAGAAACAAACATAATTTCATTAGTGAACCTCAGTTTGTTTGTGTATCTCTCACATTAATCAAAACAGCATACATTTGCAATATTTGCATGGAAATATCTGAAAGTATAGACGACTTTGAAGATCACTGGTTAAAACATAGTACAGCTGTTGTATACTTCACTTGTACATATTGTTCAAAAGCATATTGTGATGGTTTAAATGCTTTTTTAGAACATGCTAAGATACATGAAGTTAATGTGAAACAGTATGTGCTATCTTGTACAGTGAAGTATGAAAATGCTGAATTTGTTTGTAAACATTGTAATGTTGGTTTTAAATCCAAAAAATCCTTTGATGAACATGatgttattcataaaataaacatATTGAATTCTCCGAATAATGAGGCTCAAAACCACGAAATGTCTATATTAGAGTCAAATATAAGTCAAATTTCTAATATGTTGGAAATAAATAGATTGAGCACTGAAAAGCAACAGAAAGATATGCAAAAAGAAAGTCGTACAAATCAGGCAAGTAAACATCCAAATCGAAGTTGTTCAATAGAATCTGATAAAGATAAGGAcagagaaaaattaattaacatatTGGAGGGAAATGAAGATGATTCAGAATATGAATTGATAATAGATTGGATAGAGAAACCAGAAGAGGAAAATAAATTAGCAGAAGAGGGAAGAAATAAAGATAAACAAACTACGCCGGATAATATATTAACTACACATTCTGTGATACAAAGTTCTACAGTTTCAAAAAATAGTACTGTTAATGCATCTACAAGTAATGTAATAGTACATGAGCCTCCAAAAAGTAGTACAGCTTCTGAAAATATTGTTCCAACATCTTCTCAAACTGAAAATCTAAAAGTATCTACAGATGTTCCAGTTAAACCAGTGATTCAAGATACAATTGAAATTACAAAAGAATTACAATGTTTAAATGTCGAAAACGCTGACCATGATTATACTGGAAATGTAACTAAAGATGAAGAGGAGTCAACAACATCAAAGAAAAATAGTCCTCCAAAACCAAAACAAGGATTCTTGCGAGTAAAGTCTCTTGCAGAACTTACAAATAGTACAAAACCAGTACAAGCTGAGCCTACTGAAAACGTTAATCAACGTTTGCCAACTCATCTTATTCTCATTCAAAACAATAAATCGAATGAAAGTTCAAGACAACCTGGTTCTGTACCTTTTTCTGCAATTCCTGCAAAACAAATTACAGTTGCCACTACATCGATAATAAATGACCAACAGTTGAAGCAAGCACAAATGCATATAAATCAAAACAGACATACAGCTAGTTTTATACAGAGTTCAACATCAGGGTATCATAAAAATTTACCTGCTTGCAATATTGCACGAACAACAATGAGTATACCACGTTCTGCTGCGAAAAACGATAATGCATCTGCTAGGTCAGCAGCAAGTTGTTCTAACATACAAAATCAACGAGCAGGATACACAGCACCTACTTTTATGGATTCATATATAAATTCCTTAAATAATACAATGCATTCAAATCCACAAGTAAAAAGACCATCAAATGCTAATTCAAAATCTAATAGGCATAATAATGCTGGTCACAAAATACCAAGCAGAGTTAACAACCAGAATTCTAAATGCCATAAGCGTTCTCCACAAATTATTTCTTTCCAATATCCTTATGGAATTAGCAGCTCAAGTAACAGTACTGAACCTCAGCAAAAAAATCAAGAGATGGTGATTAATCCAGTAACAGGAGAAGCTTCTACCATCTTTTACACAACTCCTAATAATTCCACAGGCGGTATGTCAATAGTAATTAATCAGACTACACCTGCTGTACAAAATATGCCCACAATAAATATTTTGGGACAGGAACAGCAACAATTGTATCAGCCACAAGTTTATAGTGAACCTGCAATGATTGCGGACCATTCATATGCACAACCGAATGCAACTAATTTTTCTGCAACAAGCAATGTTTATCAGATAGTAACTAGCGAATATCAAGTACCAGAAAGAGAAACTTTACCTACCTATAAAGTTAATTTACAATCACCAATATTTATTTGTTCTTATTGTCCGGACGTTAGGTCTTTTCTGTCTGCTGAACAATTAGAAATGCACATGAATATAGATCACAATTTCATATGCAATACTTGTGGTCAACGTTTGTACAGTTTTGAGAAGTTAAATATGCACAAAATGAAACATGGTTTTATTTAA
- Protein Sequence
- MESTDKEINNLHSDLGDCSSKPVNESTLLQQNEQSNSNRNFRLTTLRKRSVININMKGSSKARNIEALHRLLCKPLSINVTRLPVSELQKISKVQHKIQNNERSISQIGIRNRVRGKRRQAYGWKHIKKSAKPQSASSCQTIVSNNLDLSSQDSPESVKEPYIKLRRIDEVIHKIAQTFAKVIPNKVCNARAHTDQTEKDHTIANGSKEVVSEPSDIDTDERIQNNNSPISTSSPDINETLQLNDQFQNEVEDSDSIEINRNACNRNFKRKRKILFDSDDESDSNTNNVSGNLQEISSRSIKMLKLHTPEKKTENYVADKEHSDHEENTINTNSSITIKNVNDSYENLNVIENVSPKSHESNIRKRITRQQNNASTFVPLDVICAEERNEHEMLKYDTVAGAKEQTLSNEEFQSQITKSSISHESLKIKYNLLKNLRVYLIQLDHIKHSRDNKYSALEIEQLTRKYMELLNNSEFESVKLSLITEEMEDTQNAEILNTNASKLTKNIEIKQKKISDNVAEEMSELDTSVHSEQPSTPLVCTEHALPSSPVKSSTRISKASRVTEHVIKTEKLKDRLHSSMTRSTNEKHSPNKESSKTSIRKSSPKKSSKNIESLGSIQADTCEMIFSEKPVVTHNEKVLVSGRKTFVTKIHAKTVNIINPKVNTKKNITSCSSIISPVKKKPVEKKDNSKSINYKCIVCDLRFENYSALQHHLTTHTQKQSNVLPNTSKESATIQTDSSEDIQEALLHSPEAADSAESSRQTHNTKRSKQQSKGTSTQDLQPKKRSYFSKQRSKFMNMLCKPTACDICSKVFPTATDLAAHIFLHTEYELQKAYELAKHKKSNVNEETKSKKSKQTKNTKELDNESKTNLIVEKSAEVVNEQEKLTTAMDHNESLSTEDLKVTHSEKSTTLPTTIPIATASSTISTVIQPSLPLVTAAAATTTITTATSTSVVNETSSEGLQSHSTESKSEKGKTKKSFKICECHGKLEPDNNCLQIEMVLLCHTCKVLFRSMECFDTHYDLPEYELCGKNRGNRSRTPNILCAVCGIIFNSVQEVRHHLENHARVRQSCTLDFRCKICKVVFIGIGAQFYVHWSKHLQDPYWKADESAFPVHSVVNVLNQNKEAENYLQIAEYICSKCKIPFITESDLKRHHVKCKMSNSNTNGTSSNSNTNVEKSLEIEVNCSLCNDVFTEKTTFYKHVRNKHNFISEPQFVCVSLTLIKTAYICNICMEISESIDDFEDHWLKHSTAVVYFTCTYCSKAYCDGLNAFLEHAKIHEVNVKQYVLSCTVKYENAEFVCKHCNVGFKSKKSFDEHDVIHKINILNSPNNEAQNHEMSILESNISQISNMLEINRLSTEKQQKDMQKESRTNQASKHPNRSCSIESDKDKDREKLINILEGNEDDSEYELIIDWIEKPEEENKLAEEGRNKDKQTTPDNILTTHSVIQSSTVSKNSTVNASTSNVIVHEPPKSSTASENIVPTSSQTENLKVSTDVPVKPVIQDTIEITKELQCLNVENADHDYTGNVTKDEEESTTSKKNSPPKPKQGFLRVKSLAELTNSTKPVQAEPTENVNQRLPTHLILIQNNKSNESSRQPGSVPFSAIPAKQITVATTSIINDQQLKQAQMHINQNRHTASFIQSSTSGYHKNLPACNIARTTMSIPRSAAKNDNASARSAASCSNIQNQRAGYTAPTFMDSYINSLNNTMHSNPQVKRPSNANSKSNRHNNAGHKIPSRVNNQNSKCHKRSPQIISFQYPYGISSSSNSTEPQQKNQEMVINPVTGEASTIFYTTPNNSTGGMSIVINQTTPAVQNMPTINILGQEQQQLYQPQVYSEPAMIADHSYAQPNATNFSATSNVYQIVTSEYQVPERETLPTYKVNLQSPIFICSYCPDVRSFLSAEQLEMHMNIDHNFICNTCGQRLYSFEKLNMHKMKHGFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00964740;
- 90% Identity
- iTF_00964127;
- 80% Identity
- -