Basic Information

Insect: Mecyna flavalis
Gene Symbol: -
Assembly: GCA_949319885.1
Location: OX439436.1:3651638-3664269[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 5.1 4.5e+02 2.5 0.2 1 23 90 113 90 113 0.90

2 17 0.023 2 9.9 0.1 2 23 142 164 141 164 0.96

3 17 0.85 74 5.0 1.6 2 23 389 411 388 411 0.96

4 17 0.13 11 7.6 0.2 2 23 450 471 449 471 0.95

5 17 6.2 5.5e+02 2.3 0.7 1 23 487 510 487 510 0.84

6 17 0.0042 0.37 12.3 1.7 1 23 519 542 519 542 0.94

7 17 0.38 33 6.1 0.9 1 23 555 578 555 578 0.93

8 17 0.035 3 9.4 0.5 3 23 624 645 623 645 0.87

9 17 4e-05 0.0035 18.6 1.9 1 23 679 701 679 701 0.97

10 17 5.6e-05 0.0049 18.1 2.3 1 23 708 730 708 730 0.98

11 17 0.0001 0.009 17.3 2.3 1 23 735 757 735 757 0.96

12 17 0.00018 0.016 16.5 0.7 1 23 763 785 763 785 0.98

13 17 3.7e-05 0.0032 18.7 1.1 1 23 791 813 791 813 0.94

14 17 0.00028 0.024 16.0 2.5 2 23 820 841 820 841 0.98

15 17 0.0027 0.24 12.8 0.6 2 23 850 872 849 872 0.97

16 17 0.0034 0.3 12.5 0.5 1 23 877 899 877 899 0.97

17 17 1.5e-05 0.0013 19.9 1.1 1 23 905 928 905 928 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	5.1	4.5e+02	2.5	0.2	1	23	90	113	90	113	0.90
2	17	0.023	2	9.9	0.1	2	23	142	164	141	164	0.96
3	17	0.85	74	5.0	1.6	2	23	389	411	388	411	0.96
4	17	0.13	11	7.6	0.2	2	23	450	471	449	471	0.95
5	17	6.2	5.5e+02	2.3	0.7	1	23	487	510	487	510	0.84
6	17	0.0042	0.37	12.3	1.7	1	23	519	542	519	542	0.94
7	17	0.38	33	6.1	0.9	1	23	555	578	555	578	0.93
8	17	0.035	3	9.4	0.5	3	23	624	645	623	645	0.87
9	17	4e-05	0.0035	18.6	1.9	1	23	679	701	679	701	0.97
10	17	5.6e-05	0.0049	18.1	2.3	1	23	708	730	708	730	0.98
11	17	0.0001	0.009	17.3	2.3	1	23	735	757	735	757	0.96
12	17	0.00018	0.016	16.5	0.7	1	23	763	785	763	785	0.98
13	17	3.7e-05	0.0032	18.7	1.1	1	23	791	813	791	813	0.94
14	17	0.00028	0.024	16.0	2.5	2	23	820	841	820	841	0.98
15	17	0.0027	0.24	12.8	0.6	2	23	850	872	849	872	0.97
16	17	0.0034	0.3	12.5	0.5	1	23	877	899	877	899	0.97
17	17	1.5e-05	0.0013	19.9	1.1	1	23	905	928	905	928	0.98

Sequence Information

Coding Sequence: atgACTTCTGACGAGTCTGACGATGAACCACTATCAGTGCTAGCAGCCACGAAGAAGTTACATCCTGAAAAATTTCAGTTTCTTGATTCTACAGCTATCGAGGTCGTCCCGGTTcgtaaaaagaagaaaaagaagaagaagaagctttTAGAGGCTGATCATCTTGCTATCACAATAAATTTGTGTAAAAATAAACCAGATATCAAAGTGGTGGAAAGACCAGCGGACGTCTGGTTATACATGAAAGATTTGAACCCAAGTGGCCCATACAGTTGCTTGCTATGCTCGTTCTGGTTTATAAACAGAGCTAAACTAATCATACATTACGTTTTGAACCATAGAAAAGATTTCTGTGGGATTTGcagATACTTTGTGCCAGAGAGAGAAGATTGGCTTAACCATGTTAAGTTTCACACACCTTGGCCATGTTCTCAGTGCACCGAGACATACCCTACAGAGCCAGAAGTACGAAAGCATCTAAGCACTGTTCATAACTTAGTCCATTGCCGATTGTGTCATTTTAGAACATCTGACGATGAACAGTATGATACTCACCTGTTCCAAAAACACAATGTTTTGAATGTGGCTAACAAAAATGCTGAACCAATGTGGGAAATTCAATATGATGAGGAAACAAAGTTTCTGTGCCTACTTTGTTCAAAAGGGAATAACTTAACCACAATATTTTTCAGCCATTACATGGGCTATCACCACTTTACACTTAAATGTTTGACTCAAATCATCTCAGGTAATGATGCTCCATTCAGTGTTGAAGGGGCTAATGTGAGCACAGATTTCATTGAAGTTCAGTTAAAGAATGAAAAGATTGGTTACATAGACATGGAAAAGAAAGTAGAACCAGTGACGGAAGAGCAAGGGGAAAATTCAACTGTAGTCTTAGTACCTGAAATTAAACAAGAAATAACAAGTGATAATGAGGAAGAAATAGATGTTGATGCTAATAATATGTCCAATAAAACAGATCCTACAGACACCTATAAAGGGGAGGAGGACTTTGATGTTACACTAGTAGAATTGATTGTCTTGCAAAAGAGTTACTATGACTATGTCAATAAGACCCTAAGTTGCATTAATTCAAATATATTAGCAGATGAGACTGGACTTGATTACAAAAGCTTGAAAAAGGACTTTGGTGTAGATGTAACCTGTTCTCTGTGCAAAACAAGAGTTAATTCTGTCCACACTTATGTGACTCATATGTCAAAGATTCATTCGGTGAAGTCAGTGCCACTTTATTCTTGTCGAGTTTGTGCTACAGCATTTGATGCTCGAAATGAGTTTGATAGTCATGTATCAGATGAGATGGCTTTGTTTGATGACCTATGGATCTGCCAGTTTTGTGATAACGAGTTTGACAGCAGAGAAGCAGCAAGAAAGCATTTAAATGAACATTGGGATGTTATGGAGTATGACAATTGCTTCAGCCCACACTTAGGGTTTAAATGTAAATTCTGCCCTACACTGTTTTGGAATGAAACAGACAGAGAGACTCATCAAGTTAGAGTTCATTACAGTAACCACAAGAAAGATTTTTATAAGTGTCAGACCTGCGCTGAGACTTTTAGCGATAAGATCTGGTTCATCCACCATCAACTGGACAGGCACCAAACAGCAATTGCTGTCAACGAGGTGATGTTCCTCTTCAAATGCCATCTCTGCAGTCTGGTCCTCAACTCCATTGACGACATGAGAACCCACTTTAATGCAGAGCACCCTGAAGCCAGGAAGATATTCTGTACTCTCGGCTCTTGCTTGTACCGGCCGCTCAGCCAACGCAAGTCGTTTAAACTACATGTCAAGACATTCCACGCGAACGAGGGTCGCGGGCCGAACGAGAACTCTGCCAACTGTCCGATATGTGGGCGCGAGTTTAGCAGCGCACGCGCGTGCGGCGCGCACATGTCGCAGTCGCACGGCACCGGCAAGTTCAAGTGCAAGCTGTGTCGCGAGGTCATGCACACTATGGACGagagGAAGCTTCACTATCTAATCCGTCATCCGGGCCGGCATCCGTTCGAGTGCACGGAGTGCGGCAAGTCGTTCCAGTACAAGTCGTCGCTATACATGCACAAGCAAGAGCACTCGCCTAACAAGCAGAACTACACTTGCACTTACTGCTCGAAGGTGTTTATGAAAAAGGACTCGTTCCGCGAGCACCTGCAGATCCACGAGGGCCCGCGGCACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGGCGGCACACGGGCGAGCGGCCCTACGCCTGCCCGCAGTGCCCGCGCACCTTCGCCGACAAGGGCGCCTGCACCTCGCACCTGAGgACTCATACCAAAGATAGGTCCTACGCTTGCATATACTGCGGGCAGACGTTCGTCCAGAAGTCTAAGCTGACATACCATATCAGAAAACATACTGGAGAAAATCTGGAGACGTGCACGGTGTGCTCTAAACTGTTCACAAGCGCGTGTTCTCTCCGAGAACACATGCGGATACATGACCGGTCGTCGATGGAGTTAGTCCAGTGCCCTCTGTGTGATCGTAAATACCAAAATGGCCGCTACATGATGCGTCACCTTCGCACTCTCCACAATAAAGAGCGGTTTTCATGCCCGCTGTGCCGCAAGTCGCTCACCAGCGTGGCCGGCCTGAGGCACCACGTGGTCACCCACGGCCGGTCCAACATGTACAAGTGCAAAGTATGCCCCAAGACGTACGCTGTACGAAGAACGCTAATGAAACACCTCCGAATACGGCACGCCGTGAAGACCTCAGATCTGAACGTGAAGGACTACTTCCACCGGCTGGACCCTCGCGAGTGCAACCTGCCGCTTGACGAGGAAACCCTCACAAAGATCTTCGGCCCCCCTCCGAAGAAGACCAACAACGATATCCTCATCGGTGACTTTGTTACCTTCACCAAAACACTCAAGATTGCAGCGAATATAGACCACGTGAAAGAGAACGaggatgacgatgatgatgaagatgatcaGGACAAGGAGACGGGGGAGGAGAGTGAAGGAGAGGAGAAGTACAAGGATGAGCAGACCCATGATGATGAGGATGGGGAGTTGGAACCTACGGATTTTGTTAGTGTTAAGATTGAGCATGTGGAAGAAGAGGAAGAGGAAGATTGTTAG
Protein Sequence: MTSDESDDEPLSVLAATKKLHPEKFQFLDSTAIEVVPVRKKKKKKKKKLLEADHLAITINLCKNKPDIKVVERPADVWLYMKDLNPSGPYSCLLCSFWFINRAKLIIHYVLNHRKDFCGICRYFVPEREDWLNHVKFHTPWPCSQCTETYPTEPEVRKHLSTVHNLVHCRLCHFRTSDDEQYDTHLFQKHNVLNVANKNAEPMWEIQYDEETKFLCLLCSKGNNLTTIFFSHYMGYHHFTLKCLTQIISGNDAPFSVEGANVSTDFIEVQLKNEKIGYIDMEKKVEPVTEEQGENSTVVLVPEIKQEITSDNEEEIDVDANNMSNKTDPTDTYKGEEDFDVTLVELIVLQKSYYDYVNKTLSCINSNILADETGLDYKSLKKDFGVDVTCSLCKTRVNSVHTYVTHMSKIHSVKSVPLYSCRVCATAFDARNEFDSHVSDEMALFDDLWICQFCDNEFDSREAARKHLNEHWDVMEYDNCFSPHLGFKCKFCPTLFWNETDRETHQVRVHYSNHKKDFYKCQTCAETFSDKIWFIHHQLDRHQTAIAVNEVMFLFKCHLCSLVLNSIDDMRTHFNAEHPEARKIFCTLGSCLYRPLSQRKSFKLHVKTFHANEGRGPNENSANCPICGREFSSARACGAHMSQSHGTGKFKCKLCREVMHTMDERKLHYLIRHPGRHPFECTECGKSFQYKSSLYMHKQEHSPNKQNYTCTYCSKVFMKKDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPQCPRTFADKGACTSHLRTHTKDRSYACIYCGQTFVQKSKLTYHIRKHTGENLETCTVCSKLFTSACSLREHMRIHDRSSMELVQCPLCDRKYQNGRYMMRHLRTLHNKERFSCPLCRKSLTSVAGLRHHVVTHGRSNMYKCKVCPKTYAVRRTLMKHLRIRHAVKTSDLNVKDYFHRLDPRECNLPLDEETLTKIFGPPPKKTNNDILIGDFVTFTKTLKIAANIDHVKENEDDDDDEDDQDKETGEESEGEEKYKDEQTHDDEDGELEPTDFVSVKIEHVEEEEEEDC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01071870;
90% Identity: -
80% Identity: -