Mfla012695.1
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- -
- Assembly
- GCA_949319885.1
- Location
- OX439422.1:5482296-5485025[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.5 7.5e+02 1.8 2.5 1 23 5 27 5 27 0.95 2 18 1.4 1.2e+02 4.3 0.1 2 23 55 77 54 77 0.93 3 18 0.0041 0.36 12.3 5.5 1 21 100 120 100 122 0.95 4 18 0.025 2.2 9.8 0.3 2 23 127 148 126 148 0.96 5 18 0.00067 0.059 14.8 4.3 1 23 153 176 153 176 0.95 6 18 0.0063 0.55 11.7 1.4 2 23 186 208 185 208 0.96 7 18 0.021 1.9 10.0 3.5 1 23 214 237 214 237 0.96 8 18 6.1e-05 0.0054 18.0 2.5 1 23 241 263 241 263 0.98 9 18 0.12 11 7.6 0.5 1 23 313 335 313 335 0.98 10 18 0.13 11 7.5 0.3 1 23 364 387 364 387 0.93 11 18 0.00017 0.015 16.6 4.0 1 23 411 433 411 433 0.98 12 18 0.0068 0.6 11.6 0.5 3 23 439 459 438 459 0.96 13 18 0.0076 0.67 11.4 2.5 1 23 464 487 464 487 0.91 14 18 1.1 1e+02 4.6 5.2 1 23 497 520 497 520 0.95 15 18 0.0041 0.36 12.3 1.7 1 23 526 549 526 549 0.96 16 18 1.5e-05 0.0013 20.0 0.4 3 23 555 575 553 575 0.97 17 18 2e-06 0.00017 22.7 0.6 1 23 581 603 581 603 0.98 18 18 0.0017 0.15 13.5 0.1 1 23 609 632 609 632 0.93
Sequence Information
- Coding Sequence
- ATGGGCTTCTGTTTCAAATGCTTCTTCTGTCTCGAATACCATTCCGATCCGACCAGCCTTCTCAAACACACAGCGTCCCACGAAATGCCAGAAACGAATGATATTTTAGAGAAATACGTTCCGAAAGGAAAGAGATGTCTTCAAGTCGATATATCGCAACTTAAATGTAGGTTATGTGGGGAAAATTCAGACAATTTGGAAACTGTTAGGGGTCATTTAGAGAAAGAACATGGGACGGAGTTTTTACCGGCTAGTAACGGAATGACAGAGTATGATTTGGAAGTTAAGAATGGAATGTTCTCTTGCCATATATGCGGGAAGGAATTTCATTCGTTTCCATTGTTAAATAAACACATAAATTGTCATGTGGGAAAAGTGGTCTGCGAGGATTGTGGTGCAGGCTTTTTGTACCAGCATTTGCTGATGAAACACAAAGAGAGTCATTTGAGCAGAAGATTTAACTGTAAACATTGCGAAAGGACATTTTTTAAGAACAGTCAACTAAAGTATCACACAGAAATAGTGCATAAAGGGAAAGCGCGAGTAAAACCAAAGAAATGCCCCCATTGTTCAGAAACTTTTAGAGAGTACTACAGCAAAATAGTTCATTTAAGAGAGGCTCATGGAATCAGCAAGAATTTTCAATGCCATGTCTGCAAAAGCAACTTTGGGACTCGGAGAGCTTTGACAGAACATACGACGAGATTTCATACGGAGAAGTTCAAATGCGATGTGTGTTCTAAATGCTTTGGGATAGAGTCTAAATTAAAGCAGCACATGCGAGGGCATACAGGCGAAAGAACCTTCATATcGACGGAGAGAAAACGCCCGGCGTCAAGTATTTGGTCCATGACGCTAAAAGAACGAGAAAATGCTGGTATCCTCCTCAACGGGACCACGATGAAGCCTTTCACATACATGTCCTTCCCTCTTCGCTACAAATGCTTCTTCTGCGAAGAACTCTTCCCCGAACTAGAGAAGTTACTAGACCATACAAACAGTCACGAAGTTCCTGACGTCAAAGATATGCTAAAAGGCTCTGGTCTTCTTAAAAAAGGAAAGAAAACCATCAAAGTTGATATTTCAGAGTTCAAATGCAAACTATGCAGTGAAAACCTTACAAGCATTGACGATGCTAGGCGACACTTAGCTGAGAAACACGAAAAGAAATTTAATATGGACTCAGGAAATGGTATTATAGCGTACACTTTGAAGACGAAAGATGGAGTTTTTTCCTGCCACCTTTGCACGCAAACTTTTACTAGCTTTTTCCTTCTGAACAAACATATAAATGTGCACTTTAGTAACGCTATTTGCGAATGGTGCGGCAAGGGATTCGTGTCGCATCAAAGATTATTGCAGCACAAAGAAATTCATCTAAAAGGAAAGTTTTACTGCGAAAAATGTAAGATTTCTTTCGACAGTCCGTCTAAATTCAGATACCACAACGACAGAACGCACGGAAAACCAAACAAAATTTACAATATATATAACTGCCAGCGGTGTTCCGCAAGATTCGACCACCATTACGAAAAAATGAAACATATGAGCGAAAATCATGGAGTTAATTTCGAATTTAAATGCGAAACTTGCAATTCTATATTTAAGACACGGAAATCTTTGGCTGGACATCGGATTAAGTATCACTTGCAGAGTATAGCTTGTGAAGTTTGCAAGAAGCCTTTTGCAGAGAGAGGCCATCTAAAGAAACATATGGCGATGCATACGGAAGAAAGGAATTTTCCATGTCCTCTTTGTAATAAGACGTATAAGTATGAAAAGAACGTTAAAGCCCATATGAGAGTACACAATCCGGACTGGAAGTTTGCTTGCGCCGATTGTTGGATAGGGTTTGTAAGCAAAATTGAGTTTAGAAGACATATGGCGGAAACTCATGGACCTCAGGCGACCACGTAG
- Protein Sequence
- MGFCFKCFFCLEYHSDPTSLLKHTASHEMPETNDILEKYVPKGKRCLQVDISQLKCRLCGENSDNLETVRGHLEKEHGTEFLPASNGMTEYDLEVKNGMFSCHICGKEFHSFPLLNKHINCHVGKVVCEDCGAGFLYQHLLMKHKESHLSRRFNCKHCERTFFKNSQLKYHTEIVHKGKARVKPKKCPHCSETFREYYSKIVHLREAHGISKNFQCHVCKSNFGTRRALTEHTTRFHTEKFKCDVCSKCFGIESKLKQHMRGHTGERTFISTERKRPASSIWSMTLKERENAGILLNGTTMKPFTYMSFPLRYKCFFCEELFPELEKLLDHTNSHEVPDVKDMLKGSGLLKKGKKTIKVDISEFKCKLCSENLTSIDDARRHLAEKHEKKFNMDSGNGIIAYTLKTKDGVFSCHLCTQTFTSFFLLNKHINVHFSNAICEWCGKGFVSHQRLLQHKEIHLKGKFYCEKCKISFDSPSKFRYHNDRTHGKPNKIYNIYNCQRCSARFDHHYEKMKHMSENHGVNFEFKCETCNSIFKTRKSLAGHRIKYHLQSIACEVCKKPFAERGHLKKHMAMHTEERNFPCPLCNKTYKYEKNVKAHMRVHNPDWKFACADCWIGFVSKIEFRRHMAETHGPQATT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00408656;
- 90% Identity
- -
- 80% Identity
- -