Cper023071.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596229.1:3190487-3193807[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.031 2.4 9.3 0.8 2 23 87 109 86 109 0.92 2 19 0.2 16 6.7 5.0 1 21 132 152 132 154 0.95 3 19 0.024 1.9 9.6 0.3 2 23 159 180 158 180 0.96 4 19 7.2e-05 0.0057 17.6 2.8 3 23 187 208 185 208 0.95 5 19 0.012 0.92 10.6 1.8 2 23 218 240 217 240 0.95 6 19 0.042 3.3 8.9 3.9 1 23 246 269 246 269 0.96 7 19 5.9e-05 0.0046 17.9 2.5 1 23 273 295 273 295 0.98 8 19 8.4e-05 0.0065 17.4 2.3 1 23 301 323 301 323 0.98 9 19 3.1 2.4e+02 3.0 0.2 2 13 330 341 329 343 0.85 10 19 0.0072 0.57 11.3 0.5 1 23 384 406 384 406 0.98 11 19 0.011 0.84 10.7 0.6 1 23 435 458 435 458 0.94 12 19 0.00016 0.013 16.5 4.0 1 23 482 504 482 504 0.98 13 19 0.0065 0.51 11.4 0.5 3 23 510 530 509 530 0.96 14 19 0.074 5.7 8.1 3.3 1 23 535 558 535 558 0.91 15 19 0.43 34 5.7 5.0 1 23 568 591 568 591 0.95 16 19 0.0014 0.11 13.6 1.6 1 23 597 620 597 620 0.96 17 19 1.4e-05 0.0011 19.8 0.4 3 23 626 646 624 646 0.97 18 19 1.9e-06 0.00015 22.5 0.6 1 23 652 674 652 674 0.98 19 19 0.0016 0.13 13.3 0.1 1 23 680 703 680 703 0.93
Sequence Information
- Coding Sequence
- ATGGCATCAGAAACGAGTATCTGGCAACTCACTGCCTCGGAAAGGAGAAATGCCGCCGCTCTCATACATTTTACGACTGTTCGCCCGTTTATATTTATGGGATTCAGTTTTAAATGCTTCTTCTGCTTGGAGTATCATTCTGAACCCAGTAGCCTCTTACAGCACACTTCCACACATGAACAGTTAGAGAAGAAAGAGATCTTTGAGAAGCATGTTCCTAAAGGCAAGAGGTGCTTGCAAGCAGACATCTCCGACCTAAAATGTCGTCTTTGTAAGCAAACATTTCCAAATTTGAAAACTGTTCGAAGTCATTTAGACTTAGAACATGGAGTGGAACTGTCTCCCGCTGGTAATGGCATGACGGAATACAATATGGAGGTTAAAAATGGAATGTTCTCGTGCCACGTCTGCGGAAGCGAATTCCATACATTTCCGTTGCTAAATTCTCATATGAATTGTCATGTCGGTAAAGTGGTGTGTGAGGATTGCGGTGCTGGATTCCTGTACCAGCATTTGCTTATGAAGCATAAGGAAAGTCATTTATTGAAGAAATTCGGTTGCAAACACTGCGATAAGACGTTCTATAAGAACAGCCAGCTGAAATATCACACCGAAATAGTACATAAAGGAAAAGAACGGGTCCGACCTAAGAAATGTCCTCACTGCTCTCAATCGTTTAAAGAGTATTACAGCAAAGTCGTCCACTTAAGAGAAGCGCATGGAATCACCAAGAATTTTCAGTGTCACCTTTGTAAAAGCAATTTTGGGACTAGAAGAGCGTTGACTGAACATACGACGAGATTTCACACTGAGAAATTCAAATGTGATGTGTGCTCTAAATGTTTTGGGATAGAGTCGAAATTGAAGCAGCATATGCGAGGGCATACAGGAGAAAGGAGTTTTGTTTGTCCGATATGCAAAAACGCATATATGCATAAGATGTCGCTAAGGAAACATATGAGGAATCATAGTTCAGAGTTCAAAATTGTATGTTCGGAATGCGGCGCCGGGTTTCACAATAAGACATCCGAGAGAAAACGTCCAGCGTCCAGCATTTGGTCCATGACGCTTAAAGAGCGGGAGAATGCCGGAATTCTCCTCAACGGGACCACCATGAAGCCTTTTACGTACATGTCCTTCCCTCTGCGCTTCAAATGCTTCTTCTGCGATGAGCTGTTTCCACAGCTGGAGAAACTACTAGACCATACGAATATTCACGAAGTTCCTGATGTCAAGGAAATGCTGAAAGGAACTGGTTTGTtaaagaaaggaaagaagacAGTCAAAGTCGACATCTCGGAATTCAAATGCAAATTATGCGACCAGACTTTGACAAGCATTGATGAGGCAAGACGACATCTATCTGAGAAACATGAGAAAAAGTTTAACGTGGATTCCGGTAATGGCATCATAGCGTACAGCTTGAAAACTAAAGACGGCATCTTTTCTTGCCATCTCTGCACCCAAACGTTCACCAGCTTCTTCCTTCTAAACAAACACATCAATGTACACTTTAGCAACGCTATATGTGAGTGGTGCGGAAAAGGATTCGTGTCGCACCAAAGACTGTTGCAACACAAAGAGATACACTTGAAAGGAAAGTTTCATTGCGAAAAATGCAAACTCTCTTTCGACAGTCCAGCTAAATTTAAGTACCACAATGACAGAATGCACGGTAAGCCGAACAAACTGTACAATATATACAATTGCCAGCAATGTTCAGCGAGATTCGATCACCATTACGAGAAAATGAAGCATATGAGCGAAAATCATGGAATCAATTTTGAGTTTAAATGTGAAACTTGTAACTCCGTGTTTAAGACTAGGAAATCTTTAGCCGGACATCGGATTAAGTACCATTTACAGAGCATAGCCTGTGAAGTTTGTAAGAAGCCTTTTGCTGAACGTGGCCATTTGAAGAAGCATATGGCTATGCATACTGAAGAACGAAATTTCCCCTGTCCACTTTGCAACAAGACTTATAAGTACGAGAAGAATGTGAAAGCTCACATGAGAGTGCACAATCCTGATTGGAAATTTGCATGTGCAGACTGCTGGATCGGTTTTGTTAGTAAAATAGAGTTTAGAAGACATATGGCAGAGAACCATGGCcctcaaaatacataa
- Protein Sequence
- MASETSIWQLTASERRNAAALIHFTTVRPFIFMGFSFKCFFCLEYHSEPSSLLQHTSTHEQLEKKEIFEKHVPKGKRCLQADISDLKCRLCKQTFPNLKTVRSHLDLEHGVELSPAGNGMTEYNMEVKNGMFSCHVCGSEFHTFPLLNSHMNCHVGKVVCEDCGAGFLYQHLLMKHKESHLLKKFGCKHCDKTFYKNSQLKYHTEIVHKGKERVRPKKCPHCSQSFKEYYSKVVHLREAHGITKNFQCHLCKSNFGTRRALTEHTTRFHTEKFKCDVCSKCFGIESKLKQHMRGHTGERSFVCPICKNAYMHKMSLRKHMRNHSSEFKIVCSECGAGFHNKTSERKRPASSIWSMTLKERENAGILLNGTTMKPFTYMSFPLRFKCFFCDELFPQLEKLLDHTNIHEVPDVKEMLKGTGLLKKGKKTVKVDISEFKCKLCDQTLTSIDEARRHLSEKHEKKFNVDSGNGIIAYSLKTKDGIFSCHLCTQTFTSFFLLNKHINVHFSNAICEWCGKGFVSHQRLLQHKEIHLKGKFHCEKCKLSFDSPAKFKYHNDRMHGKPNKLYNIYNCQQCSARFDHHYEKMKHMSENHGINFEFKCETCNSVFKTRKSLAGHRIKYHLQSIACEVCKKPFAERGHLKKHMAMHTEERNFPCPLCNKTYKYEKNVKAHMRVHNPDWKFACADCWIGFVSKIEFRRHMAENHGPQNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00961176;
- 90% Identity
- -
- 80% Identity
- -