Mfla011960.1
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- -
- Assembly
- GCA_949319885.1
- Location
- OX439421.1:5881837-5884164[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1e-06 9e-05 23.6 4.0 1 23 8 31 8 31 0.95 2 21 0.001 0.092 14.1 0.2 2 23 37 59 36 59 0.95 3 21 1.1e-05 0.001 20.3 0.2 2 23 68 90 68 90 0.97 4 21 2e-06 0.00017 22.7 1.8 2 23 99 121 98 121 0.95 5 21 5.6e-05 0.0049 18.1 0.8 2 23 129 151 129 151 0.95 6 21 1e-06 8.9e-05 23.6 0.6 2 23 159 181 158 181 0.95 7 21 8.8e-06 0.00077 20.7 3.1 1 23 187 210 187 210 0.98 8 21 0.0016 0.14 13.5 0.1 1 23 218 241 218 241 0.95 9 21 0.00088 0.078 14.4 1.2 1 23 260 283 260 283 0.98 10 21 1.9e-05 0.0017 19.6 0.5 1 23 311 334 311 334 0.97 11 21 1.2 1e+02 4.5 0.9 2 21 342 361 341 362 0.92 12 21 0.016 1.4 10.4 2.3 2 23 371 393 371 393 0.95 13 21 0.0078 0.69 11.4 5.4 1 23 417 440 417 440 0.97 14 21 1.1e-05 0.00098 20.3 0.6 2 23 447 469 446 469 0.96 15 21 5.8e-05 0.0051 18.1 2.0 2 23 476 498 475 498 0.94 16 21 0.0082 0.72 11.3 2.2 1 23 504 527 504 527 0.97 17 21 1.4 1.3e+02 4.3 8.1 2 23 535 557 535 557 0.95 18 21 0.00015 0.013 16.8 0.2 1 23 564 587 564 587 0.97 19 21 0.022 2 10.0 1.8 1 21 594 614 594 617 0.89 20 21 0.019 1.7 10.2 2.7 3 23 631 652 630 652 0.91 21 21 5.4 4.8e+02 2.4 0.2 2 16 673 687 672 689 0.84
Sequence Information
- Coding Sequence
- atgtttcaaaatttattagaCTATGTTTGCGATTACTGCAATCGAAGTTTTACTCGAAAGTACAACTTGCAGACTCACATAGAGAACTGTCATTTGAACTCCACTTGCTATTGTGAAATTTGCGATCAAAGATTTGGAAGTCCAGCTGGCTTATTACTGCATCTCAATCGTGGGCACAATAAGTATGCCCAGCCATACCCAGAATGTGATATATGCGGACGAATCTTTACTAGGAAACAGAATATCATGTCGCATATGATCACTGTGCATTTCCAAGGAAGTGGGCGCCAGATAAAATGCCAAGTTTGTGACAAAACGTTCACGACGGAGAAGAACTTGAGACGGCATACAAACCAGCTGCATAATCCAGATGTACAGTATCCTACTTGTAATGATTGTAAAAGGGTGTTCAAAGGGAAGCATTCCCTTATAGCCCATATACAAGCAATCCACGGTTCTGGTAAAGACGCAATCAAATGTAACTTGTGCGATAAAGTTTATACGAATAATAGGAATTTGAAGAGACACATAGAAATATCGCATAAAGAACGAGGTGTTTTTCGCTGCGATTTGTGTCCGAAAGTTTACACGTCAAATCATAGTTTAAAACGACATGCGAAAACTAGACACTGCACAGAAGATGGCGACCAGTACGCTTGTGAATATTGCGACAAAGTTATAACTGGAAGAGACAATTTAGATACACACGTTTTGTCGTTTCACAAACAAGCTTATTCGATGGATTGTAGCGAAGTCGCTTCGTCGAAAACTAACGATTACGTCTGCGATTCTTGTTCTAAAACCTTTGAAGATGAACCGCGTTTAAGGCACCATGTGAAAACAGAGCATTCGTTCAAAACATTTTACAAGTATTGCAAGAATTCCCTGCTCAAGCAAATGGGTAAAGATGTACCTAGCAAAAGtgtattttataaatgcgaattCTGTGGGATTGGTTTTACGAGCGTGTATGAGTTGAAGGATCATATGAAATTAACTCATGATAAAGAGTATTCTCTATCAACTTGCAATGTGTGCTTTAGCAAGTTTTATAGCAAAGATACCATGTCtgatcataaaaaaatatgtttgccTCCACCCAATGTAAACACTTGTAGTCACTGCGATAAGTTATTCACGGATATATCAAGTTTGGAATTTCATACTCGTATTTTCCACCCGCAAGCACAAATAGCAGACTCTAACATAAGTTCTACGAATGATAATGAAAATCCAGATATGATTTCCTACAAGTGTGACCATTGCGAGCGCATTTATTACAGCGATAGGTCTTTGAAGCATCATATTAAGCTGAAACATACGACAGACGAAGCAATGGAATGTGAATACTGTGGGAAGATTTGCAGTAACAAATATTACTTAGCTTCTCACATAAAAATAGTACATAGCAACGATTCTTGGTCGAAATGCGGTTATTGCGACAAACAATTCAAATCTAAGAGGAATATTCGAAGGCACATAGAATATACGCATTTAGGGATGCAAAGATACAAATGTATTGAGTGTGAAACACTGTTTAAAGAGAAGCGAAGTTTGAGAAAGCATGTAAGGACCAAACATCCGAATTCTACTGCATTCCCTCAGTGCCACTTCTGCCATAAAAGATTCGAATCGGCTAAATCGTGCAAAATACATTTAAAGCTGTTACATTCCTTTAACATGAACACATTTCCTTGTGACCTTTGTTCCGTGTCGTTTAGTTCTAACGAAGCTCTATCGATACATTTACAGACTAAGCATTTAGCTGAAGACGAAATATACAAATGTGAAGAATGTAATCTAGTCTTCAAAGGGCAGGAAAGATTTGAGCAACACAATTTAGGTTGTCACGTTAAAATTCAAAACGTGATTCAGAAAGTGCTACCGCGCTGTATTATTTGTATGAAAGATTTCAGCACAAGAAAAACTTTAAAGAGACATATAAAGAAGTTTCACGAAGAATTTGATGTTGACGAATTGGTTGCTTTCGGGGCAAATAGGAGAAACTTTAGTGTCGAATGTGCAGATTGTCTAAAGAAATTTAACGATGACACGCACTATAATGTGTACCAGAAAATGAAACATATAAGAGATGCGATAATTTTCAAATGTGAGACTTGTTTGTACTCTTACAATTCGCTAGAGTACTCTATAGAGCGATATAAGTTGACCAGTTTTGATAGTTGTAAAGGAAAAATGATTCTGAGTGAGTTATGTACCGCTGAGATGAGTGAAGAGGAGGAGGATTTTGGGTCCCATCATGAGGCGGTGAGCACTACCAGTGATATCAAGTTAGAATTAGTTGAAGAGACTTCTGAAACTGAATGA
- Protein Sequence
- MFQNLLDYVCDYCNRSFTRKYNLQTHIENCHLNSTCYCEICDQRFGSPAGLLLHLNRGHNKYAQPYPECDICGRIFTRKQNIMSHMITVHFQGSGRQIKCQVCDKTFTTEKNLRRHTNQLHNPDVQYPTCNDCKRVFKGKHSLIAHIQAIHGSGKDAIKCNLCDKVYTNNRNLKRHIEISHKERGVFRCDLCPKVYTSNHSLKRHAKTRHCTEDGDQYACEYCDKVITGRDNLDTHVLSFHKQAYSMDCSEVASSKTNDYVCDSCSKTFEDEPRLRHHVKTEHSFKTFYKYCKNSLLKQMGKDVPSKSVFYKCEFCGIGFTSVYELKDHMKLTHDKEYSLSTCNVCFSKFYSKDTMSDHKKICLPPPNVNTCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNDNENPDMISYKCDHCERIYYSDRSLKHHIKLKHTTDEAMECEYCGKICSNKYYLASHIKIVHSNDSWSKCGYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTAFPQCHFCHKRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFSSNEALSIHLQTKHLAEDEIYKCEECNLVFKGQERFEQHNLGCHVKIQNVIQKVLPRCIICMKDFSTRKTLKRHIKKFHEEFDVDELVAFGANRRNFSVECADCLKKFNDDTHYNVYQKMKHIRDAIIFKCETCLYSYNSLEYSIERYKLTSFDSCKGKMILSELCTAEMSEEEEDFGSHHEAVSTTSDIKLELVEETSETE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00961142;
- 90% Identity
- iTF_00961142;
- 80% Identity
- iTF_00961142;