Mfla005354.2
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- Rbl1
- Assembly
- GCA_949319885.1
- Location
- OX439412.1:8809047-8824517[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.01 59 4.3 0.0 29 49 817 836 795 844 0.74 2 7 0.035 2e+02 2.6 0.0 36 49 885 898 876 906 0.92 3 7 0.035 2e+02 2.6 0.0 36 49 947 960 938 968 0.92 4 7 0.035 2e+02 2.6 0.0 36 49 1009 1022 1000 1030 0.92 5 7 0.035 2e+02 2.6 0.0 36 49 1071 1084 1062 1092 0.92 6 7 0.035 2e+02 2.6 0.0 36 49 1133 1146 1124 1154 0.92 7 7 0.035 2e+02 2.6 0.0 36 49 1195 1208 1186 1216 0.92
Sequence Information
- Coding Sequence
- ATGTCTAAACCTGAAGACAGTGAAGAGAGTTGGATTGCACAAATGGATGGATTGTGTTCAAATTTAAATGTAGATCCTGCGGCTGCCAAAAAATCCAAGGAAtcatttttagaaataaaacgtAATTATACTCTTGATGGCGACATACTACACTGGATGGCTTGTGCTTTGTATGTAGCATGTAGAACATCCATAACTCCAACAGTCCAGTCTGGTAAAGCTGTAGAAAGTAACTGTGTGAGTCTTACCAGACTACTCAGGTTATGCAACATAAGCTTGATccagtttttcacaaaaattaaaaactggATGGAAATGGCCTCAATGCCAAATGACTTCAAAGAGAGGATATCACATTTGGAGCACAAGTTTGCAGTTTCCACTGTGCTGTTTAGGAATTTCCAACCTATTTTCCAACAGATCTTTTCTGGCTTGACACATGAAGCTCTAAAATCAACAAATATCAAAAGTAAAAAGCATAAAATGCAGCCATGTTCTACAAATGCACTGTTTGAATTTACCTGGTGCCTGTACATTTGTGTGAAAGGAGAGTTTCAGAACTCAGCTGATGACCTTGTTGATATGTACCATTTACTCTTGTCCTGCTTGGATTTTGTGTTTGCAAATGCCTTTATGTCAAGGCGCATTGACTTGATCAATCCTGCTTTTAAAGGCTTGCCAAATGACTGGCTGAGAGATGAATTTGAATTGCCCAAAAAAGCACCTTGCATCATTTCAATACTGTCTGAAATCAAGTCTGCACTCTCTGTGGAAGCAGCCACCATGAAGGAATACAATTGGAAACCTGTAATCAAGACATTTTTCAAGAAAGGaATTTTGAAGGGTAATGGTGAGCTTCATGGAATTTTGGAAGTGGGCAATTTTGATGCTAACCTGAAATCATTGAACAATCTTTATGAGACTTATGTTCTCAGTGTAGGAGAATTTGATGAAAGGATTTTTTTggGTGAACATGCCAATGAACAGATTGGAACACAAAGCAAAGTTTTAGGGGATGAGATATCCAAAGTCATAGCAACTTTTGGACCGAGTGGCCGCGCTTGTCCGGACACGCCTTTAACGGGTCGCGCGTACCTGGCGCGGCGCGCGGAGGAGCTGACGCCGGTGTCGGAGGCCACCAACAGCCTGGCGCGCCTGGCCGCCGCGCTCAGACGCGCGCAGCCCAGGCCTTCCGACCATCTGCTGCGACTCTGCAGTGAAAGTGGAGTGAGTGAAGAAAGCATAAACAAAAATGTGATAACTCCATGTAATGGCTGGATGGAGCAGTTTGCGAACTGTCTGAGAGAGTCCAATTGCAGTGAACAAACAGTCAAGATTCGTTGTAATATGGTCACATGCTTATACTATAAAGTCTTTGAACACATAATAAGAGAAGAACATAGGAAAAAACCTCAAGTATCTTTACAAATGCTGCTAAGCCAGGAAACATACCAGCTGACAGTATACGCGTGCTGCACCGAAGTGGTTCTTCACGCGTACGGCGTGCACTCGCTGCGGTTCCCGCGAGTGCTGCAGATATACGGGCTAAGCGCCTTCCACTTCTACAAGATCATCGAGCTCGTCGTGCAAGCTGTTGTGGAGAAGCTCAGCCGGGATGTTATTAAGCATCTTAATACGgTAGAGGAGGAAGTATTAGAATCATTAGTTTGGACGTCAGACAGCCCCCTGTGGGATCAGCTCAGCAAAGTGCCGGTGCCGCCATCCACAGACGTCTATGTCCAAGAATCACCACAATGTCGCAGAAACAATAGTTCAGTCCTATCACCAGGTTCATCAGCTATAGACAGATTTCTGTCGCCGATCGCGGACCAAgcaaagaaacaattatttaaagATAATATCAAACCAGGACAGTCACTTTTagTAGCAACAAATAATACTCCAACAAAAACAGAGCCAAATGCGGCTCAACCGTCCACTAGTGCCTCGAATGGGGAGCAGACCCCATCTACACCCAAGAAGACCAACAATTCACTTACATTATTCTTTAgaaagTTCTACAGCCTAGCGGTGGTGCGCATGAACGACCTGTGCCAGCGGCTGCGGCTGACGAGCGACGAGCTGAAGCGCAAGATCTGGACGTGCTTAGAATACTCCGTCATGCACCAGACGCATCTCATGCGCGACAGACATCTTGACCAGATACTCATGTGCACTGTATACGTCGTGTGCAAGGTATCAAACAATACTAATAATCCTGTGGAGAGGACATTTGCTGAAATCATGCGGTGTTATAGGCAACGACCACTAGCAGACAATCATGTTTATAGATCAGTATTAATTGCTCCCGCGACAGACAACAGTCCGGCAGAGAGGAGTGACTTGATCAAGTTTTACAATAAGGTTTATGTGCAGTGCATGCAAGACTTCGCCCTTCGATTCGCTGGTCGACAGAAGGAGGAATGCTGCCTGTCCCCGCTGCCGTGCGGGCGCGGCGACGCGGCGTACTCGCCGTGCGGCCAGCGCGTGTCGGAGCGGCACCAGGTGTACGTGAAGCCGCTCACCGACCCGCCGCCCGCGCTGCACCACCTCACCTACCGCTTCAGCCGCAGTCCCGCTAAGGTATGTATGCtgttcatcatcagcctgttagaGTCTactattggacaacatcacatacacgACGCGGCGTACTCGCCGTGCGGCCAGCGCGTGTCGGAGCGGCACCAGGTGTACGTGAAGCCGCTCACCGACCCGCCGCCCGCGCTGCACCACCTCACCTACCGCTTCAGCCGCAGTCCCGCTAAGGTATGTATGCtgttcatcatcagcctgttagaGTCTactattggacaacatcacatacacgACGCGGCGTACTCGCCGTGCGGCCAGCGCGTGTCGGAGCGGCACCAGGTGTACGTGAAGCCGCTCACCGACCCGCCGCCCGCGCTGCACCACCTCACCTACCGCTTCAGCCGCAGTCCCGCTAAGGTATGTATGCtgttcatcatcagcctgttagaGTCTactattggacaacatcacatacacgACGCGGCGTACTCGCCGTGCGGCCAGCGCGTGTCGGAGCGGCACCAGGTGTACGTGAAGCCGCTCACCGACCCGCCGCCCGCGCTGCACCACCTCACCTACCGCTTCAGCCGCAGTCCCGCTAAGGTATGTATGCtgttcatcatcagcctgttagaGTCTactattggacaacatcacatacacgACGCGGCGTACTCGCCGTGCGGCCAGCGCGTGTCGGAGCGGCACCAGGTGTACGTGAAGCCGCTCACCGACCCGCCGCCCGCGCTGCACCACCTCACCTACCGCTTCAGCCGCAGTCCCGCTAAGGTATGTATGCtgttcatcatcagcctgttagaGTCTactattggacaacatcacatacacgACGCGGCGTACTCGCCGTGCGGCCAGCGCGTGTCGGAGCGGCACCAGGTGTACGTGAAGCCGCTCACCGACCCGCCGCCCGCGCTGCACCACCTCACCTACCGCTTCAGCCGCAGTCCCGCTAAGGTATGTATGCtgttcatcatcagcctgttagaGTCTactattggacaacatcacatacacgACGCGGCGTACTCGCCGTGCGGCCAGCGCGTGTCGGAGCGGCACCAGGTGTACGTGAAGCCGCTCACCGACCCGCCGCCCGCGCTGCACCACCTCACCTACCGCTTCAGCCGCAGTCCCGCTAAGGACCTGCACGCGATCAACACGATGGTATCCTGCGAGGTGGGCGGTCTGAAGCGCAGCGTGCTGGGTCCCGGCGTGGTGGCGGCCGGCGCGGGCGAGGGCGACGTGGTGAAGCGCGCGCGCTACGGCGCCGCCAGCGTAGCGCGCAAGCTGCAGGGACTCATGACCGACCGCCAGGCCGTCTAG
- Protein Sequence
- MSKPEDSEESWIAQMDGLCSNLNVDPAAAKKSKESFLEIKRNYTLDGDILHWMACALYVACRTSITPTVQSGKAVESNCVSLTRLLRLCNISLIQFFTKIKNWMEMASMPNDFKERISHLEHKFAVSTVLFRNFQPIFQQIFSGLTHEALKSTNIKSKKHKMQPCSTNALFEFTWCLYICVKGEFQNSADDLVDMYHLLLSCLDFVFANAFMSRRIDLINPAFKGLPNDWLRDEFELPKKAPCIISILSEIKSALSVEAATMKEYNWKPVIKTFFKKGILKGNGELHGILEVGNFDANLKSLNNLYETYVLSVGEFDERIFLGEHANEQIGTQSKVLGDEISKVIATFGPSGRACPDTPLTGRAYLARRAEELTPVSEATNSLARLAAALRRAQPRPSDHLLRLCSESGVSEESINKNVITPCNGWMEQFANCLRESNCSEQTVKIRCNMVTCLYYKVFEHIIREEHRKKPQVSLQMLLSQETYQLTVYACCTEVVLHAYGVHSLRFPRVLQIYGLSAFHFYKIIELVVQAVVEKLSRDVIKHLNTVEEEVLESLVWTSDSPLWDQLSKVPVPPSTDVYVQESPQCRRNNSSVLSPGSSAIDRFLSPIADQAKKQLFKDNIKPGQSLLVATNNTPTKTEPNAAQPSTSASNGEQTPSTPKKTNNSLTLFFRKFYSLAVVRMNDLCQRLRLTSDELKRKIWTCLEYSVMHQTHLMRDRHLDQILMCTVYVVCKVSNNTNNPVERTFAEIMRCYRQRPLADNHVYRSVLIAPATDNSPAERSDLIKFYNKVYVQCMQDFALRFAGRQKEECCLSPLPCGRGDAAYSPCGQRVSERHQVYVKPLTDPPPALHHLTYRFSRSPAKVCMLFIISLLESTIGQHHIHDAAYSPCGQRVSERHQVYVKPLTDPPPALHHLTYRFSRSPAKVCMLFIISLLESTIGQHHIHDAAYSPCGQRVSERHQVYVKPLTDPPPALHHLTYRFSRSPAKVCMLFIISLLESTIGQHHIHDAAYSPCGQRVSERHQVYVKPLTDPPPALHHLTYRFSRSPAKVCMLFIISLLESTIGQHHIHDAAYSPCGQRVSERHQVYVKPLTDPPPALHHLTYRFSRSPAKVCMLFIISLLESTIGQHHIHDAAYSPCGQRVSERHQVYVKPLTDPPPALHHLTYRFSRSPAKVCMLFIISLLESTIGQHHIHDAAYSPCGQRVSERHQVYVKPLTDPPPALHHLTYRFSRSPAKDLHAINTMVSCEVGGLKRSVLGPGVVAAGAGEGDVVKRARYGAASVARKLQGLMTDRQAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -