Mfla018432.2
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949319885.1
- Location
- OX439429.1:2127586-2137160[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-62 1.8e-58 199.2 7.3 1 222 12 224 12 227 0.91 2 3 3.7e-14 6.5e-10 39.7 2.4 202 297 436 523 424 525 0.79 3 3 2 3.4e+04 -8.4 17.8 1 48 522 568 520 596 0.72
Sequence Information
- Coding Sequence
- ATGCCACGGGCCCCCAGCCGGAAGGGGCCCCCGGCGGAACAGCGGCTAGCGGCGCggagggcggcgcgggcggaGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAACAGGAGGACCATGCCGACAAAGCGTACGACATGTACGCAGAGACGgtggggcggcgcggcgggtcGCGGCTGGCGGCGCTCAGCCCCGCCGTGCACTCGCCGCGGCGCAGCTCCGAGGACTCACCCGACGACACCTTCAACATTAAGGATCTCAGGCACGAGTTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCTGCAGGAGGAGCATGCGCAGTTAACGCGCGAGCACAGGGAGAAGTGCTCATCACACGAGCGGCTGCGGCGCGAGGCCGTGTCCCTGGAGCGCGAGCTGGGCCTGGCGCGGGACGCCGTACGCGCGCGCgacgcggcggcggcgggcgcgggcttcGTGTTCGCGGACGCGGCCGCCGGCGCCGACGTGCCGGGCTTCGGCGCCGTGCCGCCGCTGGCGCTCGTCTCGCACGCCGCCGACAGGGCGCTGGCTGACCTGGGCGAGGGCACGCTCGGTGAGTCACCACACAGACGTCGTTCCTCGcacgcggcggcggcgggcgcgggcttcGTGTTCGCGGACGCGGCCGCCGGCGCCGACGTGCCGGGCTTCGGCGCCGTGCCGCCGCTGGCGCTCGTCTCGCACGCCGCCGACAGGGCGCTGGCTGACCTGGGCGAGGGCACGCTCGGTGAGTCACCACACAGACGTCGTTCCTCGcacgcggcggcggcgggcgcgggcttcGTGTTCGCGGACGCGGCCGCCGGCGCCGACGTGCCGGGCTTCGGCGCCGTGCCGCCGCTGGCGCTCGTCTCGCACGCCGCCGACAGGGCGCTGGCTGACCTGGGCGAGGGCACGCTCGGTGAGTCACCACACAGACGTCGTTCCTCGcacgcggcggcggcgggcgcgggcttcGTGTTCGCGGACGCGGCCGCCGGCGCCGACGTGCCGGGCTTCGGCGCCGTGCCGCCGCTGGCGCTCGTCTCGCACGCCGCCGACAGGGCGCTGGCTGACCTGGGCGAGGGCACGCTCGGTGAGTCACCACACAGACGTCGTTCCTCGcacgcggcggcggcgggcgcgggcttcGTGTTCGCGGACGCGGCCGCCGGCGCCGACGTGCCGGGCTTCGGCGCCGTGCCGCCGCTGGCGCTCGTCTCGCACGCCGCCGACAGGGCGCTGGCTGACCTGGGCGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGGTGGGCGCGAAGACGGGCCTGGAGTCGGAAGTGCGCAAGCTGAAGCTGCAGCTTAACGACGAGCGCGCCGCGCGCCAAAACGGCGTCGCCTCGCACCACGACCAGGAACTCGAGACAGAGTTGGAAAGCCTCCGACGTTGCGTGTCAGAGGCAAAGGCGAGAGCGGCGCGTGCAGAGGCCGAGGCGGCACTACAGGCCGCCGCCGTCGCGCGGCTCGAGGCGCAGGTCGCCCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGGCGCTCAAGCAGGAGCGCCGCCGCCTGCAGCGCGAGGCGCGGGAAGCCCTCAACCGAGTGGAGGAGCTGGAGACGGAGAacagccacctgacgaagcggCTCGACAAGCTGAAGAACGCCAAGTCGGCGCTGCTGAAGGACCTGTGA
- Protein Sequence
- MPRAPSRKGPPAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGSRLAALSPAVHSPRRSSEDSPDDTFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEHAQLTREHREKCSSHERLRREAVSLERELGLARDAVRARDAAAAGAGFVFADAAAGADVPGFGAVPPLALVSHAADRALADLGEGTLGESPHRRRSSHAAAAGAGFVFADAAAGADVPGFGAVPPLALVSHAADRALADLGEGTLGESPHRRRSSHAAAAGAGFVFADAAAGADVPGFGAVPPLALVSHAADRALADLGEGTLGESPHRRRSSHAAAAGAGFVFADAAAGADVPGFGAVPPLALVSHAADRALADLGEGTLGESPHRRRSSHAAAAGAGFVFADAAAGADVPGFGAVPPLALVSHAADRALADLGEGTLDVRLQKLVGAKTGLESEVRKLKLQLNDERAARQNGVASHHDQELETELESLRRCVSEAKARAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEALKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -