Basic Information

Insect: Mechanitis messenoides
Gene Symbol: Sall1
Assembly: GCA_959347415.1
Location: OY365764.1:15434400-15435920[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00055 0.051 14.7 0.0 2 23 181 202 180 202 0.97

2 11 0.0006 0.056 14.6 2.8 1 23 208 231 208 231 0.95

3 11 0.0001 0.0096 17.0 0.7 1 23 238 260 238 260 0.98

4 11 9.5e-06 0.00089 20.2 1.2 1 23 266 288 266 288 0.98

5 11 4.7e-06 0.00043 21.2 0.8 1 23 294 316 294 316 0.97

6 11 0.0017 0.16 13.1 1.2 1 23 322 344 322 344 0.96

7 11 2.1e-05 0.0019 19.2 0.7 2 23 351 373 351 373 0.97

8 11 0.00056 0.052 14.7 0.7 2 23 379 397 378 397 0.94

9 11 0.00072 0.066 14.3 0.1 1 23 403 426 403 426 0.95

10 11 0.018 1.7 9.9 0.4 1 23 432 457 432 457 0.93

11 11 1.4e-05 0.0013 19.7 1.1 1 23 463 486 463 486 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00055	0.051	14.7	0.0	2	23	181	202	180	202	0.97
2	11	0.0006	0.056	14.6	2.8	1	23	208	231	208	231	0.95
3	11	0.0001	0.0096	17.0	0.7	1	23	238	260	238	260	0.98
4	11	9.5e-06	0.00089	20.2	1.2	1	23	266	288	266	288	0.98
5	11	4.7e-06	0.00043	21.2	0.8	1	23	294	316	294	316	0.97
6	11	0.0017	0.16	13.1	1.2	1	23	322	344	322	344	0.96
7	11	2.1e-05	0.0019	19.2	0.7	2	23	351	373	351	373	0.97
8	11	0.00056	0.052	14.7	0.7	2	23	379	397	378	397	0.94
9	11	0.00072	0.066	14.3	0.1	1	23	403	426	403	426	0.95
10	11	0.018	1.7	9.9	0.4	1	23	432	457	432	457	0.93
11	11	1.4e-05	0.0013	19.7	1.1	1	23	463	486	463	486	0.96

Sequence Information

Coding Sequence: atggaCTCGTTATTATGCAGGATTTGTCTTGATAAGACCGGTACTATTTCCATATTTGACTGTGAATCGGATAATATGCAATAcagcaataaaataatgcgAATTgtcaatatcattattaacgAGGATGATGGCTTGCCCAGTATGATATGTGAAGGCTGTGCCAGCGAGCTCTCTCTATCCTATCTGTTTGTCCAAAAATGCGTGGCTTCGGACAAGGCGCTGCGTTGTTTGAGTGCACCTATCGAGCTGTATTCAGATCTTCAAGtggatattaaaaacataaaggaAGAAGAcattaaaaacgaaaaaaataaatttgaagaaaatattttagaaaattgttCTAGTCAAGATGTTGAAAAACAAAGTTACGTGGATAAAGTTgaaagttacataaaaaaagacaGTAAAAATTATGACAGTAATCAagattatagtaattatactcAACCTTTTCAAGAACaagataaaaagaataaaagtgacaaaaataagcttcgtaaaaaaaaaatgggaaGAGGAAAAGTGGGGCCCATACAGTGTGTTATTTGTGGTCTGTTGTCCAGCAGCCCTTCTGCAATGGAGATCCACATGCGTACACACACAGGTGAGAAACCATTTATGTGCACCAATTGTGATTCTAAGTTCTATACAAAAGGTTCACTAAAGAGGCATAATGAAACCTTTCACACCACTAGAGAACGCAAATTCACCTGTGAGACTTGTGGCAGTAGTTTCTTTAGAAAAAATGACATTATAACTCACATAAGGATACACACAGATGAGAGACCATATATATGTCCATATTGTTCTAAGAGGTTTCGACAGGTCGCTTCCAGAAACCGGCACCAAAGGGTCCACACAGGGGAGAAACCATATGCTTGTCCTGTGTGTGGTAAAAAGTTTTCTCAAAAGAACTTTGTAACAAAACATCAAACTGTTCACAGCGATGAGAGGAAGTACACATGTCACTTGTGCAGCAAATCAATGAAGTCAAGAACAGCACTAAATGTTCATATAGGTTTGCACACTAATGAAAAgcaaaatgtatgtaatttttgtgGAAATTCATTTTCCATGAGAGGTAACTTGCGGTTACATATCCGGCGAATGCACTCAGAAAAATCTGGACAATGTTCTATttgttcaaaaacattttctgaTTTGGAGGTACACATGAGGAAGCATACAGGTGAAAAGCCATATGTATGTGGCATTTGCAATGCTACTTATGCTGTCAAGCGGAGTCTCACCAgtcatattattctaaaacatGAAAATGCTGATAAGTTTAAATGTTCAATTGGAGACTGCAAAAAGACTTTCCCGGTAGCTACCATGCTGGAGTTTCACTTATTGAAACAACACACAAATCATACCCCCTACATTTGCCAGCACTGCCCTAGACAGTTCTTTAGAAGTGGTGATCTGGCTCGTCATTTAAGAGCAAGTCAcattgatattcaaataaaatcgcCAATCAAATCTCTTGTAGCTAAACCTATGTCTTACGCATAA
Protein Sequence: MDSLLCRICLDKTGTISIFDCESDNMQYSNKIMRIVNIIINEDDGLPSMICEGCASELSLSYLFVQKCVASDKALRCLSAPIELYSDLQVDIKNIKEEDIKNEKNKFEENILENCSSQDVEKQSYVDKVESYIKKDSKNYDSNQDYSNYTQPFQEQDKKNKSDKNKLRKKKMGRGKVGPIQCVICGLLSSSPSAMEIHMRTHTGEKPFMCTNCDSKFYTKGSLKRHNETFHTTRERKFTCETCGSSFFRKNDIITHIRIHTDERPYICPYCSKRFRQVASRNRHQRVHTGEKPYACPVCGKKFSQKNFVTKHQTVHSDERKYTCHLCSKSMKSRTALNVHIGLHTNEKQNVCNFCGNSFSMRGNLRLHIRRMHSEKSGQCSICSKTFSDLEVHMRKHTGEKPYVCGICNATYAVKRSLTSHIILKHENADKFKCSIGDCKKTFPVATMLEFHLLKQHTNHTPYICQHCPRQFFRSGDLARHLRASHIDIQIKSPIKSLVAKPMSYA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00461766;
90% Identity: iTF_00461766;
80% Identity: -