Mmes015623.1
Basic Information
- Insect
- Mechanitis messenoides
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_959347415.1
- Location
- OY365767.1:14837202-14847650[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-76 9.5e-72 242.5 19.2 1 297 128 409 128 412 0.87 2 2 1 2.8e+04 -6.9 13.4 1 44 408 451 408 486 0.52
Sequence Information
- Coding Sequence
- ATGGGTGTGCGAACGGCGCTGGTGACGCCCGAAAATAGTGATGATGAGAACGGTGATGAGTTTACAGATGCGGATTTCGGTGATACGGATGATGAGGTAGTAGTAGAGCGTGATACCGAttgtaattctaatatatctaTCAATGAAACTATGAATACAAGTGTTgtagaaaagaaaatttcaaGTAATGACAttgaaagtaattttgaaGTGATcgatcatataaataatatgaacggTAATGATAGTGAagaatttaatagttttaatttaaacgataCTAATGAGACAAATGGAGAACATTTCTTGTCGGATTTAAGCAAAGATCAAAGTGACAGCAATGGCTCAATCGTGGGAATTCTTGGAGATCAACAGAACTATGCGGAACAGCGTCTGGCGGCGCGTCGCGCTGCGCGTGCGGAGGCGCGAGAGATACGCATGCGCGAGCTGGAGCGACAGCAGCGCGAGCAGGAGGACCACGCGGACAAAGCATATGACATGTATGCAGAGACCGTGGGGCGTCGTGGTGGCAGTCGCCTCGCGACGCTGAGTCCCGCCGTGCACTCGCCGCGTCGCAGCTCCGAAGACTCCGAGGATGTCATCTGCGTCAAGGACCTTAGACACGAGCTAAAGGAAGTCGAGGAGAAGTTCCGCAAGGCGATGATATTGAACGCGCAGCTCGACAACGACAAGGCGGCTCTCGGGTACCAGCTCGAGCTGCTGAAGGACAGGATCGAGGAGCTGCACGAGGAGTACGCGCAGCTACAGCGCGAGCACCGCGAGAAATGTTCGAGCCACGAGCGCCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGAGCTGCGCGCGGGACGCCGTGCGGGCGCGCgacgcggcggcggcggcggcgggcaGCGTGTTCGTGGAGGCGGCCGCGGCGCCGGGGGCCGCGCCGGGGGAGCCCTGCGGCGCCGTGCCGCCGCTCGCGCTCGTGTCGCACGCCTCCAGCCGCCTGCTGGACGACGCGGGAGAGGGCACGCTCGACGTGCGACTGTCGCGGCTGGCGGAGTCCCGCACGTCTCTGGAGAGCGAGGTGCGCCGCCTCAAGCTGCAGCTGTGCGACGAGCGCGCCGCCAGGCAGAACGGCGTGGCCGACCACCACGAGCGAGGCATGGACACCGAGCTGGAGTCTCTCCGCAAGTCAGTGTCGGAGGCGAAGGCCCGCGCGGCGCgcgcggaggcggaggcggcgCTGCACGCGGCGGGCGCGGCGCGCCTCGAGGCGCAGGTCGCGCGCCTGCGGGCACGACACGACCAGCGGGACGACCACGACGAGCTGCTCAAACAGGAGCGGCGGAAGCTGCAGCGGGAGGCACGAGAAGCGCTGAATAGAGTCGAAGAATTGGAAACTGAGAATAGTCACTTAACGAAACGCCTCGACAAACTCAAGAACGCCAAGTCCGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGVRTALVTPENSDDENGDEFTDADFGDTDDEVVVERDTDCNSNISINETMNTSVVEKKISSNDIESNFEVIDHINNMNGNDSEEFNSFNLNDTNETNGEHFLSDLSKDQSDSNGSIVGILGDQQNYAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGSRLATLSPAVHSPRRSSEDSEDVICVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSHERLKREHASLEREVSCARDAVRARDAAAAAAGSVFVEAAAAPGAAPGEPCGAVPPLALVSHASSRLLDDAGEGTLDVRLSRLAESRTSLESEVRRLKLQLCDERAARQNGVADHHERGMDTELESLRKSVSEAKARAARAEAEAALHAAGAARLEAQVARLRARHDQRDDHDELLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00959423;
- 90% Identity
- iTF_00959423;
- 80% Identity
- -