Basic Information

Insect: Mechanitis lysimnia
Gene Symbol: -
Assembly: GCA_036026155.1
Location: JAYRBX010048470.1:3660-6587[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.051 7.8 8.6 6.8 1 23 126 148 126 148 0.97

2 15 2.1e-07 3.2e-05 25.6 2.9 1 23 153 175 153 175 0.98

3 15 0.0014 0.21 13.5 0.8 1 23 207 229 207 229 0.97

4 15 2.8e-05 0.0043 18.8 0.3 1 23 238 260 238 260 0.97

5 15 0.18 28 6.9 2.0 2 23 269 291 268 291 0.95

6 15 0.00015 0.024 16.5 1.0 1 23 307 329 307 329 0.98

7 15 1.4e-07 2.1e-05 26.1 1.9 1 23 340 362 340 362 0.98

8 15 1.1e-07 1.6e-05 26.5 3.0 1 23 368 390 368 390 0.99

9 15 3.8e-06 0.00057 21.6 3.6 1 23 396 418 396 418 0.99

10 15 8.2e-08 1.2e-05 26.8 1.6 1 23 424 446 424 446 0.96

11 15 1.2e-05 0.0019 20.0 0.4 1 23 452 474 452 474 0.97

12 15 3.1e-06 0.00047 21.9 0.8 1 23 480 502 480 502 0.98

13 15 0.0059 0.89 11.6 6.4 1 23 508 530 508 530 0.97

14 15 1.1e-06 0.00016 23.3 1.1 1 23 536 558 536 558 0.98

15 15 0.024 3.6 9.7 0.6 1 20 564 583 564 586 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.051	7.8	8.6	6.8	1	23	126	148	126	148	0.97
2	15	2.1e-07	3.2e-05	25.6	2.9	1	23	153	175	153	175	0.98
3	15	0.0014	0.21	13.5	0.8	1	23	207	229	207	229	0.97
4	15	2.8e-05	0.0043	18.8	0.3	1	23	238	260	238	260	0.97
5	15	0.18	28	6.9	2.0	2	23	269	291	268	291	0.95
6	15	0.00015	0.024	16.5	1.0	1	23	307	329	307	329	0.98
7	15	1.4e-07	2.1e-05	26.1	1.9	1	23	340	362	340	362	0.98
8	15	1.1e-07	1.6e-05	26.5	3.0	1	23	368	390	368	390	0.99
9	15	3.8e-06	0.00057	21.6	3.6	1	23	396	418	396	418	0.99
10	15	8.2e-08	1.2e-05	26.8	1.6	1	23	424	446	424	446	0.96
11	15	1.2e-05	0.0019	20.0	0.4	1	23	452	474	452	474	0.97
12	15	3.1e-06	0.00047	21.9	0.8	1	23	480	502	480	502	0.98
13	15	0.0059	0.89	11.6	6.4	1	23	508	530	508	530	0.97
14	15	1.1e-06	0.00016	23.3	1.1	1	23	536	558	536	558	0.98
15	15	0.024	3.6	9.7	0.6	1	20	564	583	564	586	0.93

Sequence Information

Coding Sequence: ATGTTAGTGTTCGAAAAAACTTGTCGGACCTGTATGAAGAGTAATGTTCCTTTGGTCGATTTATTTGGCCCTCTGAAAATTGAAGACAATTGCTCGTTAAACCTTGCGGATGTTTTGATATTAACCACtaatttaaagGTAACCACTGAAGATGGACTGCCGCAAAATCTATGTAATGAATGTGCTCGGTTTTTACAAAATGTGTATACGTTTCGTATGCAAGCACAAAACTCAGAAAGTGATCTGAAAAAACTGATAATTGTATCACAAATCAAAGAGGAAGTTGTTtacaatttgaaaaatgaatCAGACTATATACACAACATATATGATTATGCCGCAGATGATACTGAACAAGGTGATCAAATACCAACTTACATTTGTGATGTAtgcaaaaaacaatttcatagacataaaaagtttttgaatcaTTTGTCATCTCATGAGagacataaatttaaatgtccTCTTTGCAATAAGGTCTTTCATAGACAATCCTCATTAAATAGACATATCATTAAACACAATAAGATAAGTTGTGAAGATGACAAGGAGTTAATTGATGACAGTGTAGTAGAAgttgatattaatgttaaaacagAAGATTTCAATGAGCAATATAATTGTACAGAATGCACTCTTATATTTGAATCCCAAGCATGTTTATTGGAACATATTAAAGAACACAGCACCACATCTAGtattaaatcttttgtttgtaacatctgtaataaaaactttgcCTTAGAGTCTACATTGAAACTACACATACAAGAGCATACCGAGCTGCCACTTGATACTACACAATGCTTAAAATGTTTAGTAATCTTTCCAAGTTGTGAACAACTTATAGAACATATTAACAATTGTCATACAGATGATGTTAAGGAGGTAAAATTAGAGAACGGTCTTGAGCAATATGAGTGTCTTGGGTGCAATTTAGTATTTACAAAACAGAGGTCATTTTATGCTCATTTAAAAAGCCATGAacaaggaaaattaaaaaaagatagctTATTTAAATGTGATAACTGTGATaaagtattttcattaaaatcattattgagACGACATATGAAGTTGCATTTGGAGGACCGTCCATTTAAATGTACAAAGTGTACAAAGAGTTACTCCAGACAGGACCAACTTACAGCTCACATTCGCAAGCATGATGGAACTAAGCCCTATGTTTGTCCACATTGCAGCAAAGCTTTCTCTCAATTGTGCAGTTTAAAAGACCATGTCCGTACACATACAGGAGAGACACCCTTCCTGTGTTCTCAGTGTGGAAAAGGTTTTAGTAATAGTTCTAATTTACGACAACACCTACGCCGACATACTGGTGTGAAACCATTTGCTTGTAACCTCTGCCCGAAGACATTTGGAACAAAAGGACAAATGAAACAacacatagacacacacaccGGAGTTCATCCCTATAAGTGTTCTGTGTGTGGAGCCACTTTTACTAAACCTAATTCACTAAAGAAGCATAAGCTCATACATCTTGGTATAAGAGCATTTGCTTGTGACACTTGTAATATGAGGTTCACCTGCAAGGATCACCTCACACGTCACAAGCGTATCCACACGGGCGAGCGTCCGTATCGCTGCCCGCACTGTACTCGCGCCTTCGCGCAGAGCAACGACCTCAACAAACACGTGCGCGCGCACGTCGGACAGAACATATACCAGTGCACGGTGTGCCAGGCGAAATTCAGACTAATGAGAGAATTAAAAAGTCATTATCCAGTGCATTACATGAATGACCAGCCACTGGAAGCTCAAAATGAACTAGTTGTCCTCAAATGTAAAGAGGATCAAGATAACATAGAGAAACCCTCGGATGGACAGATTACTATCACATTTAATAGCAATGTACTTGATAAGAACAGTTTAGGAGATATTACCATTAATATAACGCCTGATAAAATTAGCAATTGA
Protein Sequence: MLVFEKTCRTCMKSNVPLVDLFGPLKIEDNCSLNLADVLILTTNLKVTTEDGLPQNLCNECARFLQNVYTFRMQAQNSESDLKKLIIVSQIKEEVVYNLKNESDYIHNIYDYAADDTEQGDQIPTYICDVCKKQFHRHKKFLNHLSSHERHKFKCPLCNKVFHRQSSLNRHIIKHNKISCEDDKELIDDSVVEVDINVKTEDFNEQYNCTECTLIFESQACLLEHIKEHSTTSSIKSFVCNICNKNFALESTLKLHIQEHTELPLDTTQCLKCLVIFPSCEQLIEHINNCHTDDVKEVKLENGLEQYECLGCNLVFTKQRSFYAHLKSHEQGKLKKDSLFKCDNCDKVFSLKSLLRRHMKLHLEDRPFKCTKCTKSYSRQDQLTAHIRKHDGTKPYVCPHCSKAFSQLCSLKDHVRTHTGETPFLCSQCGKGFSNSSNLRQHLRRHTGVKPFACNLCPKTFGTKGQMKQHIDTHTGVHPYKCSVCGATFTKPNSLKKHKLIHLGIRAFACDTCNMRFTCKDHLTRHKRIHTGERPYRCPHCTRAFAQSNDLNKHVRAHVGQNIYQCTVCQAKFRLMRELKSHYPVHYMNDQPLEAQNELVVLKCKEDQDNIEKPSDGQITITFNSNVLDKNSLGDITINITPDKISN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01034830; iTF_01033927;
90% Identity: -
80% Identity: -