Basic Information

Insect: Mechanitis lysimnia
Gene Symbol: ham
Assembly: GCA_036026155.1
Location: JAYRBX010000013.1:1680499-1689005[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.013 91 4.6 0.0 11 43 30 61 22 62 0.81

2 9 0.017 1.2e+02 4.3 1.7 16 29 67 80 60 92 0.75

3 9 0.002 14 7.2 0.1 13 43 93 120 83 121 0.83

4 9 0.065 4.7e+02 2.4 0.2 19 38 128 144 125 149 0.87

5 9 0.52 3.8e+03 -0.5 3.9 4 38 142 172 139 177 0.77

6 9 0.57 4.2e+03 -0.7 5.1 5 28 171 194 167 201 0.80

7 9 6e-06 0.044 15.3 0.1 16 41 605 627 586 629 0.77

8 9 8.4e-06 0.061 14.8 1.6 17 44 634 658 629 658 0.89

9 9 0.17 1.3e+03 1.0 0.7 18 41 664 684 659 685 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.013	91	4.6	0.0	11	43	30	61	22	62	0.81
2	9	0.017	1.2e+02	4.3	1.7	16	29	67	80	60	92	0.75
3	9	0.002	14	7.2	0.1	13	43	93	120	83	121	0.83
4	9	0.065	4.7e+02	2.4	0.2	19	38	128	144	125	149	0.87
5	9	0.52	3.8e+03	-0.5	3.9	4	38	142	172	139	177	0.77
6	9	0.57	4.2e+03	-0.7	5.1	5	28	171	194	167	201	0.80
7	9	6e-06	0.044	15.3	0.1	16	41	605	627	586	629	0.77
8	9	8.4e-06	0.061	14.8	1.6	17	44	634	658	629	658	0.89
9	9	0.17	1.3e+03	1.0	0.7	18	41	664	684	659	685	0.81

Sequence Information

Coding Sequence: ATGAACGGTCAAATCCCATTGAAGGCTGTGGAATTTATGAGAGAACGTAGAGAAAGTGCAGCCAGCCACTCACATCCCCAGCCAGAGGAAGAAGATAGAGAGGATACGAAGCCACGCTGTTTCTTCTGTGAGGAGCCATTCCCCAACATTGATGCACTTGATCGTCACTTGATCCAAGCACACGCACAACCAGCGTCGGCGTATCATTGCGAGTACTGCAATAGAGCGTACAGCTATCGAGCGCTCCTGCTCAGGCATCGCGCTTTGAGCCACACGGATATTAAGAAATACCCCTGCGAGAATTGCCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCTCAGCACGTCGGCGCGCGCAGCCACGCCTGCCCCGAGTGCGGTAAAACCTTCGCCACCAGCTCGGGACTCAAACAGCACACACATATTCACTCCAGCGTCAAGCCTTTTCAGTGTGAAGTTTGCTTCAAGGCATATACCCAGTTTTCAAATTTGTGTCGACACAAACGGATGCACGTGGCGTGCAAGACCATGTCAGGGTGTAGAAAATGTGGGCAATCATTTTCTTCTTACGCATCTCTTGCTAAGCACAAGAGATTTTGTGAAACTGCTACAACACGAAACGTTAATCTTCGAGGTCAGTTAGGACAAGGCTTACAACAGATACCGCCTCTACCAAATAGTATGAATAATCCCAATAATACTAATCCTTTCCCTATGTATAGGGGATCAGCGCTACCCTTACCATACAATACATTTGCACATTATCCAGCTTTCATTTCTGCGGCGGCAGCAGCTGCTTGCCCACCAGATTTTTTCAACCCTCTTCTTTTCAATGTACAAGGCGCGAGATTGGCTATGGAACACGATTTAGCACTTAACGCCAGTTTAATGGCAAAACAACAACAGGAAGGAGAAAGATCAGTAAAGAGAGAGACAGAAAGCATAGATAGTTTGACTTCTGTAGATTTATTGCATAAAGGAAAGGAGATAGTTTGTGATGATAAAGATATGGATGTAGATAGAGTTACACCAAAACCACAGGATCATTACGTAAAACAATCACCACCATCGGCTGAAGAGGCTACGTCAAAACAACGTCCATTACCAGTAATGCCTATGTCAACTACGGTTGGTCCTTTCGACTTTTCAAGAAACGAAATGAAGCCAAACTCTATATATGACTTTccgatgaaaataaataatagcgaAACGTTAGAAAATAAGTCAGTTTTACAGGAGCCTAAAGatctgtcaaaaaatattactgatgATATTGAAAAAAGAGATAGATATTCTAATATGGaggaagataaaataaaagaacagaaTGACCAACCACTTGACTTATCTGTTTCTCGAAAACCACGCGACAAGGAATCAGACGTAGAAAACGATGACAATTCTTTTCGTAATTCTTCAATCAAGTCTTACTCGCCAGCAGAAAGCCCTATCGATAGAGAAAACAAGACTCCTGAAAACGAAACAACAGATGTTGATGTGGAGGCTGTTGAACCAAAAAGGGAGGAATCCCCAGTTTCAATGTTGTCTCCTCCGTTAGCATTTCCCATGGCCGTTCATGCTCAGCACAACAACAGTCTTATGAACGCAATGTACCAACCACGCTTTCCACGATATCACTCCGCTTCAGATGCCATACTGAATTCACAACACTCGCCATATGTTCCGAgtccatttaattttttatcaccaCTTCTGGGCACCGATGGCCCTGAGAGGCAGTCAAATGCTTATGCTAAATTTCGTGAACTGAGTGCTGGTTCCGCTAAACTAAGAGATCGTTATGCTTGCAAATTTTGCGGAAAAGTATTTCCACGTAGTGCTAATTTGACACGACATCTACGAACGCACACTGGAGAACAACCTTATAAGTGCAAGTACTGCGAACGCTCATTTTCTATATCATCTAATTTACAGCGGCATGTAAGAAATATTCACAACAAAGAAAGACCATTTAGGTGTCAGTTATGCGACAGATGTTTCGGCCAGCAAACTAATTTAGATCGGCATCTGAAAAAACATGAAGCTGAGGGTGGAGATTCTCCGAGTTCTGGAGATACTGAACACGACGCGTGTTTTGATGACATTCGTTCCTTTATGGGCAAGGTGACATGCTCTCCGGTTCCTTCTCCTTCGACTAATTCGCCGCACTCCTCTCACCCCCCACACCCTCCACATCGTCCTTCTGCGATTTCCATCTCCATCTAG
Protein Sequence: MNGQIPLKAVEFMRERRESAASHSHPQPEEEDREDTKPRCFFCEEPFPNIDALDRHLIQAHAQPASAYHCEYCNRAYSYRALLLRHRALSHTDIKKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHVACKTMSGCRKCGQSFSSYASLAKHKRFCETATTRNVNLRGQLGQGLQQIPPLPNSMNNPNNTNPFPMYRGSALPLPYNTFAHYPAFISAAAAAACPPDFFNPLLFNVQGARLAMEHDLALNASLMAKQQQEGERSVKRETESIDSLTSVDLLHKGKEIVCDDKDMDVDRVTPKPQDHYVKQSPPSAEEATSKQRPLPVMPMSTTVGPFDFSRNEMKPNSIYDFPMKINNSETLENKSVLQEPKDLSKNITDDIEKRDRYSNMEEDKIKEQNDQPLDLSVSRKPRDKESDVENDDNSFRNSSIKSYSPAESPIDRENKTPENETTDVDVEAVEPKREESPVSMLSPPLAFPMAVHAQHNNSLMNAMYQPRFPRYHSASDAILNSQHSPYVPSPFNFLSPLLGTDGPERQSNAYAKFRELSAGSAKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCQLCDRCFGQQTNLDRHLKKHEAEGGDSPSSGDTEHDACFDDIRSFMGKVTCSPVPSPSTNSPHSSHPPHPPHRPSAISISI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00461745;
90% Identity: iTF_00842876;
80% Identity: iTF_00959573;