Mdes004674.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- RP20_CCG011740
- Assembly
- None
- Location
- GL501544.1:1084587-1097465[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-11 1.2e-07 32.1 0.9 1 39 15 53 15 88 0.91 2 4 2 2.2e+04 -4.3 0.6 28 39 97 109 94 114 0.40 3 4 1.5e-05 0.16 12.4 5.0 7 37 490 519 486 522 0.84 4 4 2.1e-28 2.3e-24 85.6 9.7 3 70 616 683 614 683 0.97
Sequence Information
- Coding Sequence
- ATGTATTTAAATCAACAAGTTATTGTTGCTCCAGCTGTTGGTCCAGAACCAACACGAGTGGTATGCCCAAGCTGTCGTGCACACATTGTTACCCGGTTGGATCATGAATCAACAACACGCACACATATTGCGGCAATTTTGTTGTTTGTCTTTTTTATCATTGAAACATTTGAAATGGAACTAAGCGTCACAACGCAAAGTATTTTAATTTGTTGTCGTTGGTATGGTCTTGCACCGTACACAATTAAACGAAACAAACGGCATGAAATAATTGAATTGAAATTGAATTGGTGGTCATGTGTGTTTAGCATTGCATTGGTGGTATTTTTTATTATATCAGTTGAATATGCATCACTGACTGACCCAAATGAGGGATATTCTCTCAGATCAAAATCAACGTTATCCAAGTATGTTTATTGGCTGGACATGAATTTATTGCTAGCAGCATTTGTAATTCATACAATAACAACGTTGGTCTCCGTACAAAATACATGGCATGTTAATAATTTGCTAAACACGGTGGATAAACATTTTAATCAATTGAATGGCAGCAATGAATTGCATTCACTTCGAACAAGGCGTCGTCTTTCTTTTTTCGTCTTTATAGCACTGTTTTCATTGATTCTGTTTATGAGTGTGGATTTCATTACCTGGCATCAGTCAGTATTCAAAACGAGATTGAAAATACACTCCAATGGCTGTTCACTTCACAATTCCTGTGAGGATCGACTTTATCTGATTCCATTTTTCATAATGTACACATCTTTTGTGCCTCTTTATGCAAAATGCACTACAACCATTTATCGAATTGGTATTCGTTATCGAAATCTCAATAATATCATATTGGCCGCATCCGAACGTCTCATTTGCTTTACTTTGGATAGCAAACGTTCAACCGATAAAACAGCAAGATTATTTAAAATTCATGAAGGTCTCGGAGAAGTGCTGAAACATGTTAAATCTGAATTTGGATTGACACTTTTATGTTTAATGATATCGAGCTCATTTCAAATCACAATATGCGTGTATTCTATCGTTTTGGAAAGTATTGGAAAAAATGACGTTTCCTTTTTAATATCGCAAGTATTTTGGTTGCTTTCTCATGTGATTCGGATATTTGTGATAGTCGAACCGTGCCATTTGGTGGCCTCTGAGGGCAAACGCACTCGCAGCTGTTTGAGCCGGCTACTTCGTTTGAATCGTTTTGATCCTATTTTGAAACATTTATGGCAGAAGCTAATGACCGATCGTGTGGATTTCACACTGTGCGGCTTATTTCAAGTTGATCGTACGTTATTAACGTCGATAAGCGCAGCAATCAGCACCTACTTGATGGAAAAGCAATTTATGCCTCCAACATATGAAGAAACGATGGGTGGTGTATCAAAATCCAACGGAACTGAGCTTCCCATAATGAATGCTCCTGCTCCAATTGTTACAACCGTAAATGTGATTGATGTCAATCGAACATGTACATTTTGCCAAAAACCATTGCGCTCTGAAATCAAGCATCATTCAACATGCTCAACTCATTGTGCATTTCTTTGCTGCATTCTTTCTGGAGAAAAAACAAATCCAACTGATAACTGTTCGAATGATAAACCATTGATATCCGCTGCGCACAAACAAAAGACGCAAATAAACTTGAGTTACGGTGCATATCCACATATACCGCCACCACAATATACGCAACCGAATATAAATTTTCCACAACCGCCGATGCAGCCACCACCAATGTATACCGAAATGCACGCCGAAATGCAGTCAGCTCCGGTTATTTCGAGTCAACCAATTCATGTGGTTCACGTTCAGCAAATTATACCAACCCAAGGTGTTGGAGCAGCACCATCACTAATTACTTGTCCTGCATGCAAACATGATATTATGACACGTATGGAACATGAACCTAATTCACGAACTCATCTGATTGCATTGGGCTTATGTCTTCTTGGATGCTGGCCATGTGTGTTGATACCATATTGTACCGATTCATGTCAAAGTGCGAACCACTATTGTCCCAAGTGTGGTGCATACATTGGCACATATCAAGTGATATTTTCTGATGTTTATGCACACACTGATAATAATTGCTCAATAAATAATGAATTTTGTCCAGAAAATACAACACATATTAGTTGCACCAACGATGGGATATGGGGATTTAGTGATTCATGTGAATCAGCAAATTTGATTCGAATGAGTCCAGCACGTATTCGATTATTAAGAGATTTGCATAATTCTCCACGCCAACTATTAGCATCTGGTTGCATGGAACGATTTGCACCCGCTTCACGAATGGGTGTCATGAAATGGGACAAAGAACTTGCAACTATGGCATGTTTTAATGTGTTTCGATGCATTTATGAACATGATGATTGTCGAAACACCAACAAATTTAAAAATGCCGGCCAAAATCTATTTTTACATTATTGTAAATATCCAAATAACGATATGGAATCAATAATGCGGGATGCATGCGAAGGCTGGTGGAATGAACATAACGATTGTGATATGAATTTAATGAACTCATTTCAACCAAATCCGGATTTGGCCACTGGACATTTTACACAAATGGCACGGGATAAATCAAATTGTTTGGGCTGCTGCATGGGACATTGGATAAGTGAAGGATTACATCAATACTATTTGGTATGCAATTATGGCATGACCAATAGCCGAAATCGAAAAATTTATGCAACTGGTGTGCCTGGTTCAGAGTGCAAAACTGGAAATGATGCTACATATCCGGCACTTTGTAGTGCACTGGAACGATACATGAGTGAAGAAGAAGAAATGGAATTAGAATACGATTTAGCACATGGAATTGAGACATCGGCAACACCTTCGTTGTCCATTAATGCATCGCGTTCTTCAAGACGAACCAACTTAACAACGAAGGTGAATAGAAAAATTGTTTTCTTCATTGTGGTGGCTGCCGTCAGTGCCGACTGGTGTGATAAAAATTGGTGCCCAAGTGGTACAACGCATATTGCCTGTAACAATGATGGTATGCCGGCTGCCCGTTGCCCAAATGATGTCCAACCCACCGAATTTACACAGGAGCTGATTGATGCCGTTTTGGATGAACATAACAAATTGAGAAATCAACAAGCTCTTGGACAAACACCAGGTTTTGGACCGGCTAAACGAATGGCTACAATGACATGGGACGACAAGTTGGCCAATTTTGCCGTATTGAATACCTTACAATGTAAAATGAATCATGATGAATGCCATGCAACCGAAACATTTTATCTTGCTGGACAAAATTTGGCTGGATCATATGAAACGGATGATGCAAAACTTGTTCGAACCCGAACCAACAGTTGGTTTGATGAATACAAAAATTGTAATATGGATGAGATTCGTATGCATTCATCGTTATATAATGCGGCTGGAGAAACAATGGGACATTTTACTCAAGTTGTTCGAGATGAAGCCTACAAAGTTGGTTGTGCTTTCACACGCTATACCGATGAACAAGCTAATATGCCATTTACATTGATGGCCTGTAACTATGCTGTGTCCAACATCCAGGGAGTACCAATCTATGAAGAAGGACCAACCGCTTCCGGATGTAAAACCGGAACAAATCCAAAATATCCAGGACTTTGCAGTGAAAATGAAACATATGAAGCTCAATATTTCCATTAA
- Protein Sequence
- MYLNQQVIVAPAVGPEPTRVVCPSCRAHIVTRLDHESTTRTHIAAILLFVFFIIETFEMELSVTTQSILICCRWYGLAPYTIKRNKRHEIIELKLNWWSCVFSIALVVFFIISVEYASLTDPNEGYSLRSKSTLSKYVYWLDMNLLLAAFVIHTITTLVSVQNTWHVNNLLNTVDKHFNQLNGSNELHSLRTRRRLSFFVFIALFSLILFMSVDFITWHQSVFKTRLKIHSNGCSLHNSCEDRLYLIPFFIMYTSFVPLYAKCTTTIYRIGIRYRNLNNIILAASERLICFTLDSKRSTDKTARLFKIHEGLGEVLKHVKSEFGLTLLCLMISSSFQITICVYSIVLESIGKNDVSFLISQVFWLLSHVIRIFVIVEPCHLVASEGKRTRSCLSRLLRLNRFDPILKHLWQKLMTDRVDFTLCGLFQVDRTLLTSISAAISTYLMEKQFMPPTYEETMGGVSKSNGTELPIMNAPAPIVTTVNVIDVNRTCTFCQKPLRSEIKHHSTCSTHCAFLCCILSGEKTNPTDNCSNDKPLISAAHKQKTQINLSYGAYPHIPPPQYTQPNINFPQPPMQPPPMYTEMHAEMQSAPVISSQPIHVVHVQQIIPTQGVGAAPSLITCPACKHDIMTRMEHEPNSRTHLIALGLCLLGCWPCVLIPYCTDSCQSANHYCPKCGAYIGTYQVIFSDVYAHTDNNCSINNEFCPENTTHISCTNDGIWGFSDSCESANLIRMSPARIRLLRDLHNSPRQLLASGCMERFAPASRMGVMKWDKELATMACFNVFRCIYEHDDCRNTNKFKNAGQNLFLHYCKYPNNDMESIMRDACEGWWNEHNDCDMNLMNSFQPNPDLATGHFTQMARDKSNCLGCCMGHWISEGLHQYYLVCNYGMTNSRNRKIYATGVPGSECKTGNDATYPALCSALERYMSEEEEMELEYDLAHGIETSATPSLSINASRSSRRTNLTTKVNRKIVFFIVVAAVSADWCDKNWCPSGTTHIACNNDGMPAARCPNDVQPTEFTQELIDAVLDEHNKLRNQQALGQTPGFGPAKRMATMTWDDKLANFAVLNTLQCKMNHDECHATETFYLAGQNLAGSYETDDAKLVRTRTNSWFDEYKNCNMDEIRMHSSLYNAAGETMGHFTQVVRDEAYKVGCAFTRYTDEQANMPFTLMACNYAVSNIQGVPIYEEGPTASGCKTGTNPKYPGLCSENETYEAQYFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -