Mdes000590.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- -
- Assembly
- None
- Location
- GL501505.1:81622-83131[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.2 1.5e+03 -0.3 0.1 26 48 4 26 2 29 0.69 2 4 0.00026 2 8.9 0.0 26 49 56 79 46 82 0.91 3 4 4.1e-07 0.003 17.9 0.0 16 49 98 131 95 134 0.95 4 4 3.7e-05 0.27 11.7 0.0 18 49 215 246 213 249 0.94
Sequence Information
- Coding Sequence
- ATGAGCTTCACATGCCCATTTTGTGATATTTTGCTCCCAGCCGAAATTTTTTTACTGGAACATATTAATAAATATCATGTTGCCCCGGTGGACAGTGATGGAGCCAATAATCCAATCGATGATGTTGTATTGGTCCGAGAAAGATTAATCGAAAAAATTCAATTCGTGTGCAACATTTGCGATACTGTTTTCGATAACGGTAAAGTTTTAAAGCAGCATATTGAAATGAATCATATTTTTTCAGACGACAATGATGAAGCCGTTAATCAAAACGATGATGCAGTGTTGGTCCGCGAAAGATCAAACAAAGAAAAAAACATTGTGTGCAACATTTGCGATGCTGTTTTTGATAACGGTAACGTTTTAAAGCAGCATATTGAAATGAATCATATTTTTTCAGACGACAATTCGAAAAAATCAAGTGAGGATGAAGCCACTCATGGTAACGATAATGCCGGTTTGGTCGGCGAAAGTTCAATCAAAAAAACAAAATCGTGTGACATTAGTGATGATGTCCACATTATAGAAAGAGTCTACAATAACATTAACGTTCCAAAGCAGCACATTAAAATGAACGATGTTGGTCCGAAAGACAATGATGAAGCCGTTAATCAAAACGATGATGCAGTGTTGGTCGGCGAAAGATCAAACAAAGAAAAAAACATTGTGTGCAACATTTGCGATACTGTTTTCGATGCCGATTGCCTTTTAAAGCAACACATTGAAATGCATCACATTGGTCCGAAAGACAATAATAATACGGAAAATACATCAAAAATTGAAATTAAGCTTGCTGTAGCAGCAAATATCAGTTTTTCATCGGTCAGCCTGCGTTTTGATGAAGGGCCATTGGTTAAAATCGGTTTTGCACGCAATAAAGTAACGTTTGTTACAGTTGATCAATGA
- Protein Sequence
- MSFTCPFCDILLPAEIFLLEHINKYHVAPVDSDGANNPIDDVVLVRERLIEKIQFVCNICDTVFDNGKVLKQHIEMNHIFSDDNDEAVNQNDDAVLVRERSNKEKNIVCNICDAVFDNGNVLKQHIEMNHIFSDDNSKKSSEDEATHGNDNAGLVGESSIKKTKSCDISDDVHIIERVYNNINVPKQHIKMNDVGPKDNDEAVNQNDDAVLVGERSNKEKNIVCNICDTVFDADCLLKQHIEMHHIGPKDNNNTENTSKIEIKLAVAANISFSSVSLRFDEGPLVKIGFARNKVTFVTVDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00957528;
- 90% Identity
- iTF_00957528;
- 80% Identity
- iTF_00957528;