Mdes002343.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- -
- Assembly
- None
- Location
- GL501493.1:2195629-2199021[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 5.3 4.4e+02 2.0 3.4 1 23 198 220 198 220 0.86 2 21 0.022 1.8 9.5 1.5 1 23 226 249 226 249 0.98 3 21 0.022 1.8 9.5 2.3 1 21 254 274 254 278 0.92 4 21 0.0013 0.11 13.3 3.5 1 23 309 331 309 331 0.97 5 21 0.0015 0.12 13.1 2.1 1 23 337 360 337 360 0.98 6 21 0.64 53 4.9 0.1 6 21 369 384 367 388 0.91 7 21 0.0052 0.44 11.4 2.8 1 23 422 446 422 446 0.96 8 21 0.00065 0.054 14.3 2.4 1 23 452 475 452 475 0.97 9 21 0.0028 0.24 12.3 2.5 1 23 480 503 480 503 0.95 10 21 0.77 64 4.6 0.2 1 10 521 530 521 531 0.92 11 21 0.01 0.88 10.5 1.8 1 23 532 555 532 555 0.98 12 21 0.00058 0.048 14.4 2.8 1 23 561 583 561 583 0.98 13 21 0.098 8.2 7.4 4.5 1 23 591 613 591 613 0.98 14 21 0.011 0.91 10.4 2.7 1 23 618 641 618 641 0.90 15 21 0.00065 0.055 14.3 3.8 1 23 648 671 648 671 0.96 16 21 0.00048 0.04 14.7 2.9 3 23 681 701 679 701 0.95 17 21 0.00052 0.043 14.6 0.6 2 23 708 729 707 729 0.96 18 21 4e-05 0.0033 18.1 0.2 5 23 746 764 735 764 0.81 19 21 0.0011 0.096 13.5 1.6 1 23 772 794 772 794 0.98 20 21 1.8e-06 0.00015 22.4 1.4 1 23 800 822 800 822 0.99 21 21 0.00056 0.046 14.5 2.4 1 23 828 850 828 850 0.97
Sequence Information
- Coding Sequence
- ATGGATGAAAGTAATTCCATTCGGAATTATTGTCGAATTTGTGCAACAAATCCACCAGATGTTCGGAATATTTTCGAAGTGGTTTACAAAGAGAAATTGCTTTCGGATATATTGGGACAGTGTTTGCAATGCACAATATTCCGAACCGAATATTTACCCGAATACATTTGTTCGCAATGCTGTGCAGATTTGATTAAAATGCACAAATTCATTGTAAACTATGAAAAAAGTGAAAAATGGTTCATTTCGCGTTATAATGCAATCAATGAGGCTAGAACAATCAAAATCGAAACCGAGTGTCCCATGGAATTGGAACGAATCCCGGAAATTTTGGTCGCACCGAAAATTCGAGTATTTGCCGAGAGTCTTCAAAATCCATCACCGTATGCATTGGAATTAAAACAAGAATTTGATTGCGATTATGAATTTGAAGGGGCTGAATTGTCAGCCAGTCCGAATGGATCCAGATTCGAGATGCAAGAACTGAACGAAACAAATTGTTATGAATCAGGTGGTAACAACGAAAACACTATAAGGAGAGTGGATATTCATAAAAAGAAAACGATTCGTCGCGAGAAAGAAACTGGGCAATATCAGTGTTCCATATGCGCTAAACAATTTTTGTGTTTACATAATTTAAGACTGCATGAAAATTTGCATACTGGAAGGAAAATGTTCAAATGTTACTTTTGTGACCTTCAAGTGAAGAGAAGCGATTATAGAGTAAATCACATCCGTAAAGCCCATCCCGAAGTCGTCTTTGAATGCTGGCTGTGCCGAAATAAATTCAACACATTTTATGATCTTTGTAATCATATGCTTGAGGGTTCTCATAGTAGTTTGCCTAAAAATGAATCGAATTCGGTAGCGAGCGTCTCCGGGGAAATAAAGAGAATTCGCAAAAAACCGGCATCACAAAAACAGTATCAATGCTGCATCTGTTTACGGCAATTTACAGATGCGAACAACTTTAAAAAACACGAAAATTTGCATACTAAAGCAAAAATTTACAAGTGCGAATTTTGTGACAGTGAATTCTATCGATCTGATTACCGTGTCAGACATATACGCAAAATGCACCCCGAAGTCACATTTGAGTGTTCTTGCAATTTAGTATTTGATACACAAAATGAACTGGGCCAACATATGTTGGACCAGGGTCATAGTAATTTATCCCAAAATGTATCAAATCCTGTGCTGCAAGTTTCTCGCAAAATGGAAATAGCCCAAACCCCTAAAGAAGGAACCGTCGAAACTGGACAGTATCAATGCAGCCAGCCTTCTTGTTCGAAACGATTCTTCACTTTGCACAATTTGAAAGTGCATGAAAATTTGCATACCGGCGAAAAACTTTTCAGCTGCTTTTTTTGTGACGAAACGTTCCGACGTTCTGATTATCGAGTGAAACACGTCCGTAAAGTGCATCCCGAAGTTGTGTTTGAATGCTATGTGTGCAAAGCTACATTTAATCAATATTTTACCTTATGTCAACATATGCTGGAAGTTCATTACCAGAAAATAGATCGAATAGCCGGAAATAGATCGAGAACTTGCCAAAAATATATTTGTGAGGTATGTGGAATGTCTTTTGTGTATCAATGCAAATATTGCGAATTGAAGCTCACATCTCGTGAAGGAAAAAAAAGACATGAACGAAGAATTCACGAAGCACCAAAATCATATGAATGCTACCATTGCAAGATGGTTTTTAAACTATATTTCGATTTAAGCCGTCACATGGAAATCCATTTAACGAATGGCCGCATAACATTTGAGTGTAATTATTGTAAGAGACTTTTTTGGTCCGAACACAATTATATCTCGCACAAACGGAAACATAATGCGAAAATTTTCGATTGTGAATACTGTAATGAATCATTCGAAAAACGATTCGCTTTGCATTCACATGTTCATGATGTGCATTATGCCAATTTGAAGCAACATCAATGCGATCAATGCCCACGACATTTCCCATTGAAGTCAACATTGAAGACACATATTTACAAAATACATACGAAAGAAAAACAAGAAAATCATCTTTGTACAGAATGTGGAAAAACATTTTCAGCCCACAGAATGTTAAAACTACATTTGCTAGTCCATAGTGACGAAAGACCCATTAGCTGCACTCAGTGTCCATCTAAATTTAGATACACGAATCAATTGAAAGCTCACATGCTAGTTCATACATCCGAACAAAATTATATCTGTAAAGTAGTGGTCGATGGTGGGCAAATTTGTGGCCGAAAATTTCGATATTCTTCCAGCCTAAATATACATCGAAAAAGACATAGCAATTTACATCGAAAAAGATTTCAATGTTCCAGCTGCCCTTCAAAATTTTTCAGCAACGATAAACTGCGGGTGCATACACGAATACACACGGGTGAACGTCCCTATAAATGTGACTACTGTTTTCGTGCTTTTACTCAAAAAGGCGATATGACAAAACACATGCTAATCCATTTGGGTCCAACGCCACATAAATGTACCAATTGTGGAGAAGCATTTCGATTGGAAACTGAACTTCGCAAACATTCCTACACACATTTCAAGCCAACCGAAAATTAA
- Protein Sequence
- MDESNSIRNYCRICATNPPDVRNIFEVVYKEKLLSDILGQCLQCTIFRTEYLPEYICSQCCADLIKMHKFIVNYEKSEKWFISRYNAINEARTIKIETECPMELERIPEILVAPKIRVFAESLQNPSPYALELKQEFDCDYEFEGAELSASPNGSRFEMQELNETNCYESGGNNENTIRRVDIHKKKTIRREKETGQYQCSICAKQFLCLHNLRLHENLHTGRKMFKCYFCDLQVKRSDYRVNHIRKAHPEVVFECWLCRNKFNTFYDLCNHMLEGSHSSLPKNESNSVASVSGEIKRIRKKPASQKQYQCCICLRQFTDANNFKKHENLHTKAKIYKCEFCDSEFYRSDYRVRHIRKMHPEVTFECSCNLVFDTQNELGQHMLDQGHSNLSQNVSNPVLQVSRKMEIAQTPKEGTVETGQYQCSQPSCSKRFFTLHNLKVHENLHTGEKLFSCFFCDETFRRSDYRVKHVRKVHPEVVFECYVCKATFNQYFTLCQHMLEVHYQKIDRIAGNRSRTCQKYICEVCGMSFVYQCKYCELKLTSREGKKRHERRIHEAPKSYECYHCKMVFKLYFDLSRHMEIHLTNGRITFECNYCKRLFWSEHNYISHKRKHNAKIFDCEYCNESFEKRFALHSHVHDVHYANLKQHQCDQCPRHFPLKSTLKTHIYKIHTKEKQENHLCTECGKTFSAHRMLKLHLLVHSDERPISCTQCPSKFRYTNQLKAHMLVHTSEQNYICKVVVDGGQICGRKFRYSSSLNIHRKRHSNLHRKRFQCSSCPSKFFSNDKLRVHTRIHTGERPYKCDYCFRAFTQKGDMTKHMLIHLGPTPHKCTNCGEAFRLETELRKHSYTHFKPTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00957378;
- 90% Identity
- -
- 80% Identity
- -