Mdes010215.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- MBD2
- Assembly
- None
- Location
- GL501497.1:420850-422454[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-22 6.8e-19 67.6 0.1 1 70 5 69 5 76 0.92 2 2 0.00022 0.69 9.9 0.0 28 73 116 172 72 174 0.87
Sequence Information
- Coding Sequence
- ATGAATATATCAATCGAACGAAAAAAGACGGATTGCAATGCATTGCCAAAAGGATGGCAACGTGAAGAGGTTCTACGAAAAAGTGGCCTTTCTGCTGGCAAAGTGGATGTTTATTATTACAGCCCAACCGGTGGTAAAATCGAAACGAAATCAAAGCTTGTGCGTCAATTGGGCGAAACAATTGATTTATCAACGTTTGACTATCAATCGGGTCGCCATCAAATGCTCAATCCAAATGGATCCCATTCAGCCGGCAGCAGCCAATCCATTTCAAATATACATCAACGACGTTCATTTAGTGAATCACCATTGTCCATGTCAGGCGTATCAATGTCACTGGAGATTAGTCGTGGAGGCCGTGCAGATACATCGTTGGTGCCACCAATCCGACAAACGGCATCAATTTTCAAGCAACCAGTTACAGTACATCGAAATCACGAATCAAAAGTGAAGAGCGATTTGAAACATGGATCAACACAAGAAAAACCGAAACAATTGTTTTGGGAAAAGCGATTAGAGAACATTAGCGCATGTGATACCGATGGCACAGAATTTGGACCCATTGAACTGCCACGTGGTTTCAAACCCATTGGACCCAATGTCAACAACAATACATTGTTACAATCAGTTGCAACCGCACTTCATGTCAACAATTCACAAGCGATTTCTGGACAAACTGGATCAAAATCCGTACTTTCGTCTAATGCTGGCGTATATTTGAATCCAGAACAACCACTTATGTATGCATTTGCCATTTCGGATGATGATATTAGACATCAAGAGGATTGCGTTACTTCGGCCCGGAAAAAACTTCAAGAAGCATTGAAAAATTGA
- Protein Sequence
- MNISIERKKTDCNALPKGWQREEVLRKSGLSAGKVDVYYYSPTGGKIETKSKLVRQLGETIDLSTFDYQSGRHQMLNPNGSHSAGSSQSISNIHQRRSFSESPLSMSGVSMSLEISRGGRADTSLVPPIRQTASIFKQPVTVHRNHESKVKSDLKHGSTQEKPKQLFWEKRLENISACDTDGTEFGPIELPRGFKPIGPNVNNNTLLQSVATALHVNNSQAISGQTGSKSVLSSNAGVYLNPEQPLMYAFAISDDDIRHQEDCVTSARKKLQEALKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00957055;
- 90% Identity
- iTF_00957055;
- 80% Identity
- -