Mdes022318.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- Lrrfip2
- Assembly
- None
- Location
- GL502710.1:579431-583467[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.4e-106 2.1e-101 339.5 33.9 1 299 322 608 322 609 0.93 2 2 0.075 1.7e+03 -1.7 4.0 135 166 622 653 610 662 0.51
Sequence Information
- Coding Sequence
- ATGGAAACAACGCAAATACATTCAGTGAACGAAACAGCTATGGCCATCGAACAAAACAACAATAATAATAATAATAATAATAATGATTGTAAAAATGTTGATTTTGCTGTCGATACACTTCAGTGTGATGATTTGATCAATGGAAATGATAATGATGAATTCGATTTTGACTCAAGTGACCTTGAAGATAATTCAGATACTGATGTAAATAAAGCCATATGTGAAATAGCGACGATCAAATTTGAGCAAATCGAAAATGTAAGTTCGACAAATGCCGACGATGACATAGATTGTTCAAAACAAATACAAAATGATATGCATTCAATCGATCCATTGATGGTGGATGACACGAGCATTGTGTCATCGAATGGCGGTCAATTAAATGAAAAGGTGCTGGAACAAGATCAAAATGACGAACAAGATGGGGAAGAGGAAGAGCCAATATTTTATTATCTTGAAAAATCCAATGAAATCATAAAAATACTCAAAATGGAAACAACGCAAATACATTCAGTGAACGAAACAGCTACGGCCATCGAACAAAACAACAATAATAATAATAATAATAATAATGATTGTAAAAATGTTGATTTTGCTGTCGATACACTTCAGTGTGATGATTTGATCAATGGAAATGATAATGATGAATTCGATTTTGACTCAAGTGACCTTGAAGATAATTCAGATACTGATGTAAATAAAGCCATATGTGAAATAGCGACGATCAAATTTGAGCAAATCGAAAATGTAAGTTCGACAAATGCCGACGATGACATAGATTGTTCAAAACAAATACAAAATGATATGCATTCAATCGATCCATTGATGGTGGATGACACGAGCATTGTGTCATCGAATGGCGGTCAATTAAATGAAAAGGTGCTGGAACAAGATCAAAATGACGAACAAGATGGGGAAGAGGAAGAGCCAATATTTTATTATCTTGAAAAATCCAATGAAATCGCTGAGGCGCGATTAGCGCAACGACGTCTCGCTAGAGCCGAAGCTCGAGAAATTCGTATGCGCGAACTGGAACGTCAACAAAAAGAACAAGAACAAAATGCAGACCGTGCATTTGATATGCAAACAGCTGCTGGTATAGATCCAATTGTACGTACACGTTTTGCAATGTCATCGGCAACATTGGGCTCATTACGTAGCGGAACAATGTCATCACGTCGAAGCAGCGAAGATTCACTCGAAGAGGAGGGCCGAAGCCTTCGTGATATGAAACAGGAAATTAAGGATGTTGACGAACGCTATCGAAAAGCAATGATAGCCAATGCACAATTGGACAATGAACGTGCATCAAATACATATCAAATTCAATTGCTTAAAGATAAAGTTGAAGAAATGGAAGAAACGCATGCTCAGCTTCAGCGTGAATACAAGGACAAGTGCCGTGATTATGAAACATTGAGACGAACCAACGAAAAATTAATGGAAGACTTGAAATTAGTTCAAGGTCAATTGAATGAACGTGACACATTAATAGCCGAAGAGGGTTTGACTATTGTCACAATTGAAAATGATGATGGCACCGATGCTAAACGAGCTCTAGTCACTAATGAAAATGCACAGCTATTAGATACCCATCAAGGTTCATTAGACGTGCGATTGAAAAAATTTACCGAAGAAAAAGCAACATTACGAACCGAAATAGATCAACTACATCAACAATTAATTAGTGCAAAAACACAAAGGCGGTCTGGATCACAAAATGGGCCCATTGATGAGGATGACTTTGAAGATGCACAAAGGGAAGCGAACAAATTGATAGCCGATTATAAATATAAATTGACAAAGGCCGAACAAGAGATAGCCAGTTTACAAGCAATTGAGGCCGAACTCAAGATCGAAAGACGAAAATTACAAAGAGAGAACCGCGAAATGATGGAACGGCTGGAAGAATTGGAAACGTCACACAATCATCTGCTGAAGCGATTAGATAAGCTAAAAAATGCCAAAAGTACATTACTCAAAGAATTATGA
- Protein Sequence
- METTQIHSVNETAMAIEQNNNNNNNNNNDCKNVDFAVDTLQCDDLINGNDNDEFDFDSSDLEDNSDTDVNKAICEIATIKFEQIENVSSTNADDDIDCSKQIQNDMHSIDPLMVDDTSIVSSNGGQLNEKVLEQDQNDEQDGEEEEPIFYYLEKSNEIIKILKMETTQIHSVNETATAIEQNNNNNNNNNNDCKNVDFAVDTLQCDDLINGNDNDEFDFDSSDLEDNSDTDVNKAICEIATIKFEQIENVSSTNADDDIDCSKQIQNDMHSIDPLMVDDTSIVSSNGGQLNEKVLEQDQNDEQDGEEEEPIFYYLEKSNEIAEARLAQRRLARAEAREIRMRELERQQKEQEQNADRAFDMQTAAGIDPIVRTRFAMSSATLGSLRSGTMSSRRSSEDSLEEEGRSLRDMKQEIKDVDERYRKAMIANAQLDNERASNTYQIQLLKDKVEEMEETHAQLQREYKDKCRDYETLRRTNEKLMEDLKLVQGQLNERDTLIAEEGLTIVTIENDDGTDAKRALVTNENAQLLDTHQGSLDVRLKKFTEEKATLRTEIDQLHQQLISAKTQRRSGSQNGPIDEDDFEDAQREANKLIADYKYKLTKAEQEIASLQAIEAELKIERRKLQRENREMMERLEELETSHNHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -