Basic Information

Insect: Mayetiola destructor
Gene Symbol: Rfx2
Assembly: None
Location: GL501519.1:242064-252004[+]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 4e-37 4.5e-33 114.0 0.1 3 78 330 405 328 406 0.97

2 2 1.2 1.4e+04 -2.9 0.0 25 39 758 772 745 791 0.70

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	4e-37	4.5e-33	114.0	0.1	3	78	330	405	328	406	0.97
2	2	1.2	1.4e+04	-2.9	0.0	25	39	758	772	745	791	0.70

Sequence Information

Coding Sequence: ATGAAATTTTTTCCCTTTTTTTCAGCCAAGAATACGCAGATTATATTTATTGACCATTTTATTGTGCTTTGCGGAAGAATAAAAAAAAAAACAAAAACAAAAGGAAACAAAAAATTTCCTAATTTCATTCGATTTTACGGAAAAGAAAATCGTTACGATATGGCGGCACAATTAGCATTACAACGAAATTTTTTAACAATAGCGTCAAACAATTCAATAAATACCACCACGGTGCCATCGAATCAAGCAACAACAACTCTAACAACAGCTGCTACAAATGGTGGAATTGTGACGATAACAGCCGCTGAAAATCAAGTGACGTCTGTTGAATCAAATACAACACCTATTCAAATAATGCAAGCAAATACACAGAAAAAATATATTCTGCAAGCGGGTACAACGCCTGAAGGTGTATCAATTATTGATGTAGTTCCTCTCGATCATTCTGATTCAACTGATGAAGCACCAATTACAGTATCAACAATATTACCATCGAGTTCAGTTACCTCATCGCCAAACAGCTCAAATTCACAACAAATCACCGCACAAGTGGCCTTCGTACAGACACAAGAGTCTGGCGATATATCAGAAGCAAAACCACATTTCATAACAGTAAATGTTTCTCAACAAGATAACGGTACCGGGCACGGCACATATGTGGAATATGTTGATTCGGGAATATATGCAACCTCTGCGCAAGGACAGTCACAAATGGCCTATCCGGTGTATGTGAATGAATATGCGTCAGGTACGCAGCAACAGTATTATACAACGAACGAATCTTATTCAACGACGGGTAATCATCAAAGTGAAACTTATATTGTGCCAGTTGAGGAGGCACTTCTCACAAATCAATCTCGTGAATCACCCCAAGCGTTATCTGCTGATGTAGCTTATATACATAGTCAACAAAATACGCCAACTGCATCTACAACGTCCGAATCTGATTGTACACCAAATATAACACATGCAACACGTGTTTCACCTGCGACGGTTTCTTGGCTAGTCGAAAACTATGAAACAGCCGAAGGAGTTAGTTTACCACGATCAACATTGTATAATCATTATATGCGTCACTGCAATGAACATAAATTGGATGCGGTAAATGCAGCAAGCTTTGGAAAATTAATACGTTCTGTATTCACTGGCCTTCGAACGCGCCGATTAGGAACTAGAGGCAACTCAAAATATCATTATTATGGTATACGTGTTAAGCCAGGCTCTAATTTGGCCACTGCTAGCGATGAAAAACCACAAACTTCCGGTTATATACAATCACATATAAATAGCCAACAACATCAATTATCATCGAACAGCATTGGCAGACCACGCAGATCAGCATCTAAGGCTGAATCATATGAAGCATGTTCTCAGTATCTCGGTGATGGCAACGGAGTTATTCCAAATTTTCCATCGATAAATATAATACATGAAATGCCTGAAGATGTAACACTTGAGGATGTTGACACACTACGATCCATGTATCGTGAGCATTGCGAAGCTTTTTTGGATGCTATTTTGAATTTAGAATTCAGTACAATTGAATCATTGTGGCGAGAATTTTGGCGAGCTCAGGATAATAATAATGGTGACGAAAGTGAAGAAGAAAAATATTTGAGCAAAACTAAGCTTTACAATCTGCTTCAGTGTGATGCTATTCAGGATTTTATCAAAGAGATTGATTTCAATTTTTATCAAAATATGGTTGATGTTTTGATTCCGGATGTATTGCGTCCGATACCGAGTGCATTAACGCAGGCCATTAGGAATTTTGCAAAAAACTTAGAAAATTGGCTAACATCCGCAATGACTGGATGTCCTGAAAAAATCGTTCAAATTAAATTGACTGCTGTTTCGGCTTTCAGCCAAACGCTCAGACGATATACTTCTCTGAATCATTTAGCTCAAGCCGCGAGGGCCGTTCTACAGAATAATGTACAAATCACACAAATGTTGAGCGATTTGAATCGTGTTGATTTTCACAATGTTCAGGAACAAGCATCGTGGGTTTGCGAATGTGATTCGTCCACTGTGCAACGATTGGAAAATGAATTTAAAGCTGCGCTACAACAACAAAATTCACTTGAACAATGGGCATCATGGTTGCGCTTAGTTGTTGATGGTGCGCTCGAAGAACATGAAGGTCGTTCATCATTTCCAAAGGCAGCCCGTCAATTTTTATTAAAATGGAGTTTTTATAGCTCAATGGTGATCCGAGATTTAACCTTACGTTCGGCTGCCAGTTTTGGTAGTTTCCATTTGATTCGTTTGTTGTATGATGAATATATGTTTTTTATTGTGGAGCATAAAGTTGCCGAAGCGACCAAGACTACGCCAATTGCTGTTATGGGAAAATCCGATCGAATGAAATATCTCACGACGGAAAATGATCCATTATTTGAGACTGCTTATGGATCGGATGATGCTAAACATGAAAATAGCCCAAAAAGGATGCGAAGCTAA
Protein Sequence: MKFFPFFSAKNTQIIFIDHFIVLCGRIKKKTKTKGNKKFPNFIRFYGKENRYDMAAQLALQRNFLTIASNNSINTTTVPSNQATTTLTTAATNGGIVTITAAENQVTSVESNTTPIQIMQANTQKKYILQAGTTPEGVSIIDVVPLDHSDSTDEAPITVSTILPSSSVTSSPNSSNSQQITAQVAFVQTQESGDISEAKPHFITVNVSQQDNGTGHGTYVEYVDSGIYATSAQGQSQMAYPVYVNEYASGTQQQYYTTNESYSTTGNHQSETYIVPVEEALLTNQSRESPQALSADVAYIHSQQNTPTASTTSESDCTPNITHATRVSPATVSWLVENYETAEGVSLPRSTLYNHYMRHCNEHKLDAVNAASFGKLIRSVFTGLRTRRLGTRGNSKYHYYGIRVKPGSNLATASDEKPQTSGYIQSHINSQQHQLSSNSIGRPRRSASKAESYEACSQYLGDGNGVIPNFPSINIIHEMPEDVTLEDVDTLRSMYREHCEAFLDAILNLEFSTIESLWREFWRAQDNNNGDESEEEKYLSKTKLYNLLQCDAIQDFIKEIDFNFYQNMVDVLIPDVLRPIPSALTQAIRNFAKNLENWLTSAMTGCPEKIVQIKLTAVSAFSQTLRRYTSLNHLAQAARAVLQNNVQITQMLSDLNRVDFHNVQEQASWVCECDSSTVQRLENEFKAALQQQNSLEQWASWLRLVVDGALEEHEGRSSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFFIVEHKVAEATKTTPIAVMGKSDRMKYLTTENDPLFETAYGSDDAKHENSPKRMRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00132961;
90% Identity: -
80% Identity: -