Mbor012831.1
Basic Information
- Insect
- Marronus borbonicus
- Gene Symbol
- stc
- Assembly
- GCA_902655005.1
- Location
- LR737404.1:643772-653729[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2 1.9e+04 -4.1 1.6 15 19 335 339 334 339 0.81 2 16 0.14 1.3e+03 -0.4 0.5 4 10 368 374 367 379 0.94 3 16 1.8e-06 0.017 15.2 13.5 3 19 382 398 374 398 0.87 4 16 0.4 3.8e+03 -1.9 1.0 5 10 423 428 423 428 0.95 5 16 1.8e-08 0.00017 21.6 12.5 1 18 434 451 434 452 0.97 6 16 1e-10 9.7e-07 28.8 14.3 1 19 492 510 492 510 0.99 7 16 2 1.9e+04 -4.3 1.3 6 10 540 544 540 544 0.96 8 16 2.9e-05 0.27 11.4 16.4 4 19 557 572 550 572 0.87 9 16 1.3 1.2e+04 -3.5 2.0 5 10 601 606 601 606 0.93 10 16 2 1.9e+04 -6.1 13.4 1 11 612 622 612 634 0.88 11 16 1.8e-08 0.00017 21.6 10.9 1 19 639 657 639 657 0.98 12 16 2 1.9e+04 -4.5 1.4 6 10 686 690 686 691 0.66 13 16 0.007 66 3.7 9.6 10 19 704 713 696 713 0.82 14 16 0.19 1.8e+03 -0.9 0.3 6 11 716 721 716 722 0.94 15 16 5.5e-06 0.052 13.7 16.1 1 19 749 768 749 772 0.94 16 16 0.00088 8.4 6.6 17.2 3 19 779 797 778 797 0.93
Sequence Information
- Coding Sequence
- ATGTCTAATTGGAACgcagataattattattacaatcagGAGCAATCATTTAATAATTCACAATCTCCACAGTTTCATTCAGGTGATCTGCATACTGAcacatttcttaatttttctggATCTTATTCTTCAACATATACTAGGAGTAGTGCCTCAGGATACAATAATACtgttacaaataatttacaatcaaCTACTTTAGGAGAAACTTCTACTCACAAAGTTCCGAACTTTATTGACATTTCACATTCTAATTTAACTGCGACAGCTGCCGAGTTTAAACCAAGGAACCAAAGTGTTGTTCCAACCGTAAGTAATGCAAGCAACGGAACAATAAAGAAATCTCaacaaaatattcgaaataaaaaaactgGTACTAATAAATTCTCTCAATCGTATGCTAAATCCTTTAAAAACCAGTACTCAAATATATCTGATCAAATAGAGGTAactgaattaaaagaaaacgatgaTGCTAACGATATGCAATTTTCAAAGGCCAAAAATCGAAGAAGTAATATAGCACTAGATCAAATTGGTAAAGAACCGACTGAAGAAAATAGAGATTCtaaggaaaaatgtaaaaattactttagGAATAAATTTTCTgatcaatatacaaaaaataatggaggcattgattttaagaaaaaatggaGCAAAAATTCACATAGCagatacaatagaaaatatgaTGGTCATGAGCATAAAAACccaatatataaagaaaattggaGGCAACCTTCTAATGGTGCTGGTGAGACGAACAAGCAAAATAAAGTGTGGAAGTCCGAGCAACAACtagattttaaatcaGGCGCAGCATCTCAAAGAGAGCGATTACAGCAGATGTTAGAACACTTGCAGTTGGAATGCATGGTTTGTTGCGATAAACTTCGTCATACGGATTTGGTGTGGTCCTGCAAACAATGCTATAATATTCTTCATCTTAGTTGTATTAAACAATGGGCACATACCTCGAAGATGGAAACTGGTTGGAGGTGTCCAGCGTGTCAAAATAACTACTCAGATGTTCCAAAAGATTACTATTGCTATTGTGATAAAGTTGTCAATCCCAAGTACGAACCTGGAAATTTAGCTCATAGTTGTGGAGAAATATGCGGACGCAAAGGAAGAACTTGTGACCATACATGCATACTTTTATGTCACCCTGGACCGTGTCCTGATTGTACTGTTCCAGTGTCCAGAGCGTGTGGGTGTGGCGCTACTAAAGCGACAGTAATATGTAGTACAGATGTGCCCGTTActtgtcaaaatatttgtaataaacttCTGAATTGCGGTATACATACTTGTTTGTCGACATGTCATCCTGGTGAATGTCGGAAATGTGAAGCTTTTGTTAGACAGGAATGTTATTGTGGAAAGTTGGGGCGAAAAATTCGGTGTACTTCAGAAATAAAGGGGGTTGAAGTTTTTGAATGTGATGATATTTGCGATAAATTATTAGACTGCGGAAATCATAAATGTCAATTAGTTTGCCATTCTGGATTATGTCCGCCATGTCCAACATCAGTTGAAACCGTTACTACTTGCCCATGTGGTCAAACGAAATTAACTGCGGAGAGGAAGTCTTGTTTTGATCCCATTCCTTGTTGTGaaaagATTTGTAATAAGACGTTTGCTTGTGGGCAACCAAGTGATCCACATCACTGCCAGAACAAATGTCATAATGGCGCTTGCCCATCATGTCCATTAACCACGGTTGTAAAATGTCGTTGTGGTTATATGGATAGAGAGATTATGTGCACCAAGGTGACTACTAAAGCCGATGATGCGCGTTGCgaaaagaaatgtactaaaATGAGACATTGTTGCAAGCACAAATGTAATCAATTTTGCTGTATTGAAATGGAACACATTTGTCCTCTGCCTTGTAATCGTTCCCTTTCTTGTGGTTTACATCGGTGTGAAGATGGTTGTCACAGAGGACGTTGCGCCCCATGCTGGAGGTCTAGTTTTCAAGAATTATATTGCGAATGCGGTGCTAGTGTTATTTATCCACCTGTTCCATGCGGCACTAGACCGCCAATTTGTAATAAACCTTGTCCGCGCATTAGAAGCTGCGGTCATGAAGCGTTTCATAACTGTCACATTGGTGCATGCCCCCCATGTACAGTTCTTTGCAAGAGATGGTGTCATGGAAAACACGAGCAGAGGACCACAATTCTTTGTCATCAAGATGATTTTAGCTGTGGATTACCTTGcgGAAAAAGTATGCCGTGTGGTCAACATAAATGCATTCAGATTTGCCACACTGATGAGTGCCCAACTCCCTGTACTCAACCATGTAAAAAAATCCGACAAAATTGCGAACATCCATGTAATCATCCATGCCATGAAGGAGAATGTCCTGATATACCATGTAAACAAATTGTTCGTGTGACTTGCCAGTGTGGTTTAAGGTCATCAACAAGAGTATGTATGGACTTGACAGGAGAATATCAAAGTATCGCAATGTCGCAACTTGCTTCTAAAATAGCTGATATTCAAAAGGGTCAAACTGTAGATATTACTGATATTGTAGGTAATCAGAAAAAATGTGGAGCTCTCAAAACGTTAGAATGTACCGAAGAATGTCGTGTTGCAGAAAGAAATAGACGTTTAGCTATTGGCCTGCAAATAAGGAACCCAGATCTAAGTGCTAAGTTGACTCCCAAATATTCGGATTTTATGAGAAATTGGGCAAAAAAGGATGCCCGATTTTGCCAGAATGTTCATGATAAACTTACGGAACTTGTGCAAAAAGCAAAGCAAAGTAAACAAAAGAGTCGTTCACATTCTTTCGAAACTATGAATCGCGAAAAAAGAATATTCGTTCATGAATACTGTCAAATGTTTGGGTGCGACAGTGAAGCGTACGATGCTGAACCCAACCGCAATGTTGTAGCTACAGCCTATAGAGATAAATCCTGGCTGCCGAGTATCGGACTTCTAGAGTTGATTCAACGTGAAAACGGTCAACGTAAAGTGCCTGGTCCGGTATTAGAGAATAAAAGTAATCCATTTGCAAAGCGGGAATTGGTTCCATTAAAGTCGTCTAGTAAATCAAATCATCCATCCACCCCCACCCCCCCTGGAGAATACGTAGATTATTTCGACGATCCACCAATTTAg
- Protein Sequence
- MSNWNADNYYYNQEQSFNNSQSPQFHSGDLHTDTFLNFSGSYSSTYTRSSASGYNNTVTNNLQSTTLGETSTHKVPNFIDISHSNLTATAAEFKPRNQSVVPTVSNASNGTIKKSQQNIRNKKTGTNKFSQSYAKSFKNQYSNISDQIEVTELKENDDANDMQFSKAKNRRSNIALDQIGKEPTEENRDSKEKCKNYFRNKFSDQYTKNNGGIDFKKKWSKNSHSRYNRKYDGHEHKNPIYKENWRQPSNGAGETNKQNKVWKSEQQLDFKSGAASQRERLQQMLEHLQLECMVCCDKLRHTDLVWSCKQCYNILHLSCIKQWAHTSKMETGWRCPACQNNYSDVPKDYYCYCDKVVNPKYEPGNLAHSCGEICGRKGRTCDHTCILLCHPGPCPDCTVPVSRACGCGATKATVICSTDVPVTCQNICNKLLNCGIHTCLSTCHPGECRKCEAFVRQECYCGKLGRKIRCTSEIKGVEVFECDDICDKLLDCGNHKCQLVCHSGLCPPCPTSVETVTTCPCGQTKLTAERKSCFDPIPCCEKICNKTFACGQPSDPHHCQNKCHNGACPSCPLTTVVKCRCGYMDREIMCTKVTTKADDARCEKKCTKMRHCCKHKCNQFCCIEMEHICPLPCNRSLSCGLHRCEDGCHRGRCAPCWRSSFQELYCECGASVIYPPVPCGTRPPICNKPCPRIRSCGHEAFHNCHIGACPPCTVLCKRWCHGKHEQRTTILCHQDDFSCGLPCGKSMPCGQHKCIQICHTDECPTPCTQPCKKIRQNCEHPCNHPCHEGECPDIPCKQIVRVTCQCGLRSSTRVCMDLTGEYQSIAMSQLASKIADIQKGQTVDITDIVGNQKKCGALKTLECTEECRVAERNRRLAIGLQIRNPDLSAKLTPKYSDFMRNWAKKDARFCQNVHDKLTELVQKAKQSKQKSRSHSFETMNREKRIFVHEYCQMFGCDSEAYDAEPNRNVVATAYRDKSWLPSIGLLELIQRENGQRKVPGPVLENKSNPFAKRELVPLKSSSKSNHPSTPTPPGEYVDYFDDPPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01499335;
- 90% Identity
- iTF_01121258;
- 80% Identity
- -