Mbor016615.1
Basic Information
- Insect
- Marronus borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902655005.1
- Location
- LR737382.1:15305859-15319527[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00045 0.037 14.6 2.0 1 23 268 291 268 291 0.96 2 11 1.3e-05 0.0011 19.4 3.9 1 23 307 329 307 329 0.98 3 11 3.8e-05 0.0031 17.9 1.2 2 23 335 357 334 357 0.96 4 11 0.0019 0.16 12.6 0.3 1 23 363 385 363 385 0.98 5 11 0.019 1.6 9.4 1.9 1 23 391 414 391 414 0.93 6 11 7.7e-06 0.00063 20.1 0.6 2 23 420 441 419 441 0.96 7 11 0.025 2 9.1 1.4 1 23 450 472 450 472 0.96 8 11 1.2e-05 0.001 19.5 0.7 1 23 477 499 477 499 0.97 9 11 7.9e-05 0.0065 17.0 2.8 1 23 505 527 505 527 0.96 10 11 7.1e-05 0.0058 17.1 6.0 1 23 533 555 533 555 0.97 11 11 1.1e-06 8.9e-05 22.8 0.5 1 23 561 583 561 583 0.98
Sequence Information
- Coding Sequence
- ATGGTGAGCATAATGGAAATTATGCAATTGTGTCGACTGTGTCTGGTCAAGGAACAAGTGAACGTGCCGATTTTCGACGAACAGGGCGATATTAGGCAGATATGCATGAAAATCTCGGCTTGTTTGCCGGTCAAGGTTTCAAAAGAAGACAAACTACCCAAAAAAATTTGTGATGGTTGCCTGTACAAGCTAGAATTACTTTACCAATTTTACAATACGACCGCTAACGCGGAGAAGCAACTACTATCTTGGATCGAGCAAGCTAAAATGGATTCAAAGAACGCAGCAGGTGAATTAACAACGCAACCGCAAGCAACCGTTAAACAAGAGAAACTCGAACCTGTCGAAAGTACAAACGAAACCCCGGAACTATCGAGCGAAGCGCAGAGTTACATTCTACAACAGCAACAATTACAGTATCAATCGgattttccatttaaagaatCTCAGGGTTCGAACGCAGATGGAAGCGCATCGAATACATCTGCGAATTCCGATGAACCAATAGCGAAAAGACCAAGACGAAGGCGACAAGCCACGAAGCCTATACCACCTGAGGCGATAGAATCCAGTGATGATAATGATGCTGGAGATTCTTTGATGGAAATGACTGTAACCAAGACTGAAGAAGAAAGCGAGAGCGACGGTGATGATAACGCTGATGACCCGGAACCCGACAAATATGTGGCCGTTGGCGACGATACCGACCAACCAGGACCCTCCGGACTTGGGAAAGGGAACACAGACACACCGTCCTCAAATGCCCAAATAGAGGAGCCGCAGGTGGTTAACACAGATAGATACGAATGTTCtgaatgtttacaaaatttcgcGACACGTTACCAACTATTCACGCATCAGTACAAGAACCATAGACACGTACTAGATCTTGGGGAACCCGTTCTGGAAAAAGATTCATATACCTGCGAGGACTGCGGGAAAGTTTATCGCAGCCTCCATTATTTTAACAGACACAAAAAGGAACACGTCGATCGTAGTAAAACATGCGAAATCTGCAATAAATCCTTTAAAAGCAAACTTTACCTTGCTTCCCATAAAAAGGTGATCCACGAGAAGCAAAGCGATTTCGTATGTGATTTTTGCGGGAAAATGCTTTTAAACAAGGAATTGTTGAAGCTTCACTTGATAACCCACACTAAAGCTTACAGGCACAAATGCGATGTATGCAATAAGGGTTTTTACAGCCGCCCTGAGGCCGACCATCACAAGAACATCGTCcacaaaggaaaatatttagtttgcgCCGAATGTGGAAAAAAATTCGCTAATAGAAGCTATTATAGGTCACATCTTTCCCGACATAGAATGGATCCAACCGAATTGAAATTCCCGTGCGAATTATGCGATAAAGTGCTTACAAGTAAGAACAGCCATCGGATCCATGTTAAGAACCACAAACGTGAGTTTCATGTTTGCGAAATCTGTGGTAAAATCGTTACTACAATAGATTCTTTAAAGAAGCATAAAATGACTCATACGGGCGAGAAACCGCATGCTTGTGAAATATGTGGCAAGTGCTTCCTTAGCAAGAATCTCTTGAAGACTCATATAATCACTCATACTAGGGAAAGACCGCATCGTTGTCATATGTGTCCCAAACGGTTTTCACAAAGGGGCAGTCTTACGATTCATTTCCGTTTCCACACGGGTGAGAAGCCATATGAATGTGATATTTGTCAAAGAAGATTCGTAACGAGGTCATTACTGAATGCCCATGGAAAAACTCACGGAGCGGTAATGAAataa
- Protein Sequence
- MVSIMEIMQLCRLCLVKEQVNVPIFDEQGDIRQICMKISACLPVKVSKEDKLPKKICDGCLYKLELLYQFYNTTANAEKQLLSWIEQAKMDSKNAAGELTTQPQATVKQEKLEPVESTNETPELSSEAQSYILQQQQLQYQSDFPFKESQGSNADGSASNTSANSDEPIAKRPRRRRQATKPIPPEAIESSDDNDAGDSLMEMTVTKTEEESESDGDDNADDPEPDKYVAVGDDTDQPGPSGLGKGNTDTPSSNAQIEEPQVVNTDRYECSECLQNFATRYQLFTHQYKNHRHVLDLGEPVLEKDSYTCEDCGKVYRSLHYFNRHKKEHVDRSKTCEICNKSFKSKLYLASHKKVIHEKQSDFVCDFCGKMLLNKELLKLHLITHTKAYRHKCDVCNKGFYSRPEADHHKNIVHKGKYLVCAECGKKFANRSYYRSHLSRHRMDPTELKFPCELCDKVLTSKNSHRIHVKNHKREFHVCEICGKIVTTIDSLKKHKMTHTGEKPHACEICGKCFLSKNLLKTHIITHTRERPHRCHMCPKRFSQRGSLTIHFRFHTGEKPYECDICQRRFVTRSLLNAHGKTHGAVMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626430; iTF_00627537;
- 90% Identity
- -
- 80% Identity
- -