Dtit051322.1
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000021.1:1388272-1415775[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00039 0.045 15.8 2.3 1 23 268 291 268 291 0.96 2 11 0.00016 0.019 17.0 5.1 1 23 308 330 308 330 0.98 3 11 8.1e-06 0.00095 21.1 0.4 2 23 336 358 335 358 0.96 4 11 0.00011 0.013 17.5 0.4 1 23 364 386 364 386 0.98 5 11 0.0027 0.32 13.1 2.9 1 23 392 415 392 415 0.97 6 11 0.00018 0.021 16.9 0.5 2 23 421 442 420 442 0.96 7 11 0.00024 0.028 16.5 2.3 1 23 451 473 451 473 0.97 8 11 5.2e-05 0.006 18.6 0.8 1 23 478 500 478 500 0.97 9 11 4.5e-05 0.0053 18.8 1.6 1 23 506 528 506 528 0.96 10 11 3.2e-06 0.00037 22.4 4.5 1 23 534 556 534 556 0.98 11 11 0.00021 0.025 16.6 0.1 1 23 562 584 562 584 0.96
Sequence Information
- Coding Sequence
- ATGGTAAGCATAATGGAAATTATGCAATTGTGTCGATTGTGTCTGGTCAAAGAACAAGTGAACGTACCGATTTTCGACGAACAGGGCGATATTAGGCAGATATGCTTGAAAATCACGGCTTGTTTGCCGGTCAAGGTTTCAAAAGAAGACAAATTACCCAAAAAAATTTGTGATGGTTGCCTGTACAAGCTAGAATTACTTTACCAATTTTACAATACGACCGCTAACGCGGAAAAGCAACTACTATCCTGGATCGAGCAAGCTAAAATGGATTCGAAGAACGTAGCAGGTGAATTAACAACGCAACCGCAAGCAACCGTTAAACAGGAGAAACTCGAACCTGTCGAAAGTACAAACGAAACCCCGGAACTATCAAGCGAAGCACAGAGTTACATTCTACAGCAGCAACAATTACAGTATCAATCGGATTTTCCATTTAAAGAATCTCAGGGTTCGAACACAGATGGAGTCGCATCGAATACATCTGTGAATTCCGACGAACCGATAGCCAAAAGACCAAGACGAAGGCGGCAAGCCACGAAGCCTATACCACCTGAGGCGATAGATTCCAGTGACGATAACGATGCTGGAGATTCTATGATGGAAATGACTGTAACCAAGACTGAAGAAGAAAGTGAAAGCGACGGTGATGATAACGCTGATGACCCGGAACCCGAGAAATACGTGGCCGTTGGCGATGATACTGACCAACCAGGACCCTCCGGACTTGGCAAAGGGAGCACAGACACACCGTCCTCAAATGCCCAAATAGAGAAGCTGCAGGTGGTTGGCGGAGATAGATATGAATGCTCTGAATGTTTGCAAACTTTCGCGACACGTTACCAACTTTTTACGCATCAGTTCAAGAATCATAGACACGTGCTTGATCTTGCGGAACCCCCCGTTAAAGAGAAAGATTCGTATACTTGCGAGGATTGCGGGAAAGTTTATCGTAGCCTCCATCATTTTGATAGACACAAAAAGGAACATGTTGATCGTAGTAAAACATGCGAGATTTGCAATAAATCCTTTAAAAGCAAACTTTACCTTGCTGCCCATATAAAGGTGATCCACGAGAAACAAAGCGACTTCGTATGTGATTTCTGcgggaaaatgtttttaaacaagGATTTGTTGAACCAGCACTTGATAAGCCATACTAAAGTTTACAAGTTCAAATGCGATATTTGCAATAAGGGCTTTTACAGTCGCCCCGAGGTGCACCATCATAAGAATGTCGTCCATGAAGGAAACTGTTTAGTTTGTGCAGAATGTGGAAagaaattcgttaatttgaattattacaGGTCGCATCTTTCCCGACACAAAATGGATCCAGCCGAATTGAAATTCCCATGCGAAGTATGCGGTAAAATATTCACAAGTAAGGAGAATTGCCGGGTCCATAAGAACAAGCACAAACGTGAGCATCATGTCTGCGAAATCTGTGgcaaaatccttaccacaatagGTTCTTTAAAGAAGCATAAAATGACTCATACTGGTGAGAAACCTCATGCTTGTGAAATATGTGAGAAATACTTTCGTAGCAAAATGTTGCTGAAGACGCATATAATCACTCATACTAGGGAAAGACCGCATCGTTGCCATATTTGTCCCAAACGCTTTTCACAAAGGGGTAGTCTTACGATTCACCTCCGTTATCATACTGGAGAGAAGCCGTATGAATGTgatatttgtaaaagaagattCGCAGCGAGGTCATTACTGAATGCTCATGGAAAAGCTCACGGGGTCCTCATGAAATAA
- Protein Sequence
- MVSIMEIMQLCRLCLVKEQVNVPIFDEQGDIRQICLKITACLPVKVSKEDKLPKKICDGCLYKLELLYQFYNTTANAEKQLLSWIEQAKMDSKNVAGELTTQPQATVKQEKLEPVESTNETPELSSEAQSYILQQQQLQYQSDFPFKESQGSNTDGVASNTSVNSDEPIAKRPRRRRQATKPIPPEAIDSSDDNDAGDSMMEMTVTKTEEESESDGDDNADDPEPEKYVAVGDDTDQPGPSGLGKGSTDTPSSNAQIEKLQVVGGDRYECSECLQTFATRYQLFTHQFKNHRHVLDLAEPPVKEKDSYTCEDCGKVYRSLHHFDRHKKEHVDRSKTCEICNKSFKSKLYLAAHIKVIHEKQSDFVCDFCGKMFLNKDLLNQHLISHTKVYKFKCDICNKGFYSRPEVHHHKNVVHEGNCLVCAECGKKFVNLNYYRSHLSRHKMDPAELKFPCEVCGKIFTSKENCRVHKNKHKREHHVCEICGKILTTIGSLKKHKMTHTGEKPHACEICEKYFRSKMLLKTHIITHTRERPHRCHICPKRFSQRGSLTIHLRYHTGEKPYECDICKRRFAARSLLNAHGKAHGVLMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00956508;
- 90% Identity
- iTF_00626430;
- 80% Identity
- -