Basic Information

Insect: Marronus borbonicus
Gene Symbol: -
Assembly: GCA_902655005.1
Location: LR737380.1:23752429-23756640[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.012 0.99 10.1 0.0 1 23 156 178 156 178 0.98

2 22 0.0074 0.61 10.7 0.5 1 21 184 204 184 205 0.94

3 22 2.4e-05 0.002 18.6 5.1 1 23 212 234 212 234 0.98

4 22 7.4e-06 0.00061 20.2 1.6 3 23 242 262 242 262 0.98

5 22 0.00018 0.015 15.9 3.0 1 23 267 289 267 289 0.98

6 22 0.00091 0.074 13.6 0.5 5 23 316 334 315 334 0.95

7 22 8.4e-08 6.9e-06 26.3 1.5 2 23 342 363 341 363 0.97

8 22 4.7e-06 0.00039 20.8 1.8 2 23 369 390 368 390 0.96

9 22 5.1e-07 4.2e-05 23.8 1.6 2 23 397 418 396 418 0.97

10 22 1.6e-06 0.00013 22.3 3.0 1 23 423 445 423 445 0.98

11 22 3.4e-07 2.8e-05 24.4 0.7 2 23 452 473 451 473 0.97

12 22 1.1e-05 0.00092 19.6 4.1 1 23 478 500 478 500 0.98

13 22 0.0027 0.22 12.1 1.0 2 23 507 528 506 528 0.96

14 22 0.00065 0.053 14.1 1.1 1 23 533 555 533 555 0.98

15 22 9.5e-08 7.8e-06 26.1 2.0 2 23 561 582 560 582 0.97

16 22 1.5e-07 1.2e-05 25.5 1.9 1 23 587 609 587 609 0.98

17 22 1.2e-06 0.0001 22.6 2.6 2 23 616 637 615 637 0.97

18 22 0.00012 0.0096 16.4 1.1 1 23 641 663 641 663 0.97

19 22 4.2e-07 3.5e-05 24.1 1.2 2 23 670 691 669 691 0.97

20 22 1.7e-07 1.4e-05 25.4 1.9 1 23 696 718 696 718 0.98

21 22 3.6e-06 0.00029 21.2 1.2 2 23 725 746 724 746 0.97

22 22 0.00033 0.027 15.0 2.3 1 23 751 773 751 773 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.012	0.99	10.1	0.0	1	23	156	178	156	178	0.98
2	22	0.0074	0.61	10.7	0.5	1	21	184	204	184	205	0.94
3	22	2.4e-05	0.002	18.6	5.1	1	23	212	234	212	234	0.98
4	22	7.4e-06	0.00061	20.2	1.6	3	23	242	262	242	262	0.98
5	22	0.00018	0.015	15.9	3.0	1	23	267	289	267	289	0.98
6	22	0.00091	0.074	13.6	0.5	5	23	316	334	315	334	0.95
7	22	8.4e-08	6.9e-06	26.3	1.5	2	23	342	363	341	363	0.97
8	22	4.7e-06	0.00039	20.8	1.8	2	23	369	390	368	390	0.96
9	22	5.1e-07	4.2e-05	23.8	1.6	2	23	397	418	396	418	0.97
10	22	1.6e-06	0.00013	22.3	3.0	1	23	423	445	423	445	0.98
11	22	3.4e-07	2.8e-05	24.4	0.7	2	23	452	473	451	473	0.97
12	22	1.1e-05	0.00092	19.6	4.1	1	23	478	500	478	500	0.98
13	22	0.0027	0.22	12.1	1.0	2	23	507	528	506	528	0.96
14	22	0.00065	0.053	14.1	1.1	1	23	533	555	533	555	0.98
15	22	9.5e-08	7.8e-06	26.1	2.0	2	23	561	582	560	582	0.97
16	22	1.5e-07	1.2e-05	25.5	1.9	1	23	587	609	587	609	0.98
17	22	1.2e-06	0.0001	22.6	2.6	2	23	616	637	615	637	0.97
18	22	0.00012	0.0096	16.4	1.1	1	23	641	663	641	663	0.97
19	22	4.2e-07	3.5e-05	24.1	1.2	2	23	670	691	669	691	0.97
20	22	1.7e-07	1.4e-05	25.4	1.9	1	23	696	718	696	718	0.98
21	22	3.6e-06	0.00029	21.2	1.2	2	23	725	746	724	746	0.97
22	22	0.00033	0.027	15.0	2.3	1	23	751	773	751	773	0.97

Sequence Information

Coding Sequence: ATGTCAATAAAGAAGGAAAGCGATCTCAACGATCTTTCAGCTGGCCCTGTATATAGTGTAGCTGACTGCTGGAGCACATGTTTACAAGAACAGCTAACAAATTCCTCGTATAGTGATCCTATAAAATTCTCTGACAAATTACCAGCCTGTGTATCTGAAACGaaCTGGGCAAAGGAGATTGCGCCTTCATCAGAGCAAGCACGTCCATTAAAAGTGGAAGCAAATGAAATACAAAGTTCTTCGAGTGTAACTGTGGATCCTGCAACAACTGTCTTAGCAGGATGTGATGAAACAGTAGAGAAAGTTGTTTTCTGTACAAAATTTGAGGAAACAGAAACACAGATTTTATCTGAATATGCCCCATCTACTTCAGGTGCACCACAACTGCAGACATTAGATAATCTTTGTAAAAATGGCTGCCAGGTctgtaaagaaaaattatgcGAGCATATCGATGGAAAATCCTTTCAATGTTCGGTATGCCTTCAACAGTTTCCGATAATAGCTGAGCTAACTGCACATGTGCGAATTCATACTGAGGAAAAACGTTATGTTTGTGATTTTTGCGAGAAGAGTTATATAGATGAAAACGACTTGTTAATGCATACATGTTCACGTACAGGAGAGAAGTCATTTCCATGTAGATATTGCGATAAAAAGTTTTCTACAACACATCTCTTGCGTTCCCATTTAAAAAGACATAATGTCAATAAACCTTGGGGATGTCGAATCTGTAACACATCATATACACAATCTTCTCACCTTTGGGCTCATATGAGAGCACATGCtgggaagaaatattgttgtaaattatgtggTGAAAAGTTTACCTGGCGTTCCGCTTTTAATGTACATATGAGAAGACATAATGGGGATAAACTCTTGCGAGGAAAAATCCTTTCAACAGATACGAAGATACATTCTGCAAAGAAGCGCTCTGGTAAATTATGTGATAAGAAGTTTGCAGAATCTTCCTCTTTAAATGCACATAAAAAAAGACATACTACTAGCAATAAGTTTTGGCAatgtgaaatttgtaaaaaatcatataCAAGATCTTCTAACCTTTCAATGCACATGAAAACGCACACTGCAAAGAAGCTTTCTTGTAACTTGTGTGGTAAGAAGTTTACGCAAACTTCCTCTTTAAGTGCACATACGAAAAAACATTCTGGCGATGAACTTTTgcaatgtaaaatttgtaacaaatcgTATGTGCAATTTTCTCACCTTTTAGCGCACATGAGGATACATTATGGGGAGCagttttcttgtaaattctgCAAGAAAAGGTTTGCACGGGCTTACACATTAAATGCACATATGAAAAGACATACTGGCAAAGAGCTTTGGCGGTGTCAAATCTGTAACAAATCATACATAACGTCTAGTCTCCTTAAACGACACATTAAGATACATACTGGAGAGAGGTTTCCTTGTAAAGtatgtaataaagaatttacacGGTCTTGCTCTTTAAGTCTACACATGAAAAAACATACTGGTGATGAACCTTGGAGATGTAAAATCTGTAACAAATCATTTTTAACTTATCAGTCTTTTTCGGGACACATGAATATACATACTGGAGAGAGATATTCGTGTAAGTTATGTGATAAAAAGTTTACATGGGTTAGCTCTTTAGGTTTACATATGAAAAGACATAATAATGTGCGCTGgcaatgtaaaatttgtaacaaatcaTATACACAACGTTCCACTTTAAGAATGCATATGAGGATGCATGCTGGAGAGAAATATTCTTGTAAATTATGTGATAAAGAGTTTAAAAGGTCCGTCTCTCTGAAAGCACATATGAAAAGACATACTGGCGAGAAGCTTTGGAGTTGCAAAATCTGTAACAAATCATATACAACATCTTCTCATCTTTCAAACCACTTGGAGACGCACGGAGAGAAGTTTGCCTGTAAATTATGTGATAAAAAGTTTACATGGTCTGCCACCTTGAATTCACATATGAAAAATCATATTACCGATAAGCCTTGGCAAtgtaaaatttgcaacaaatcATATAAACAATCTTCCTCTTTAAGTGTACATATGAAACTTCATACTGGAGAGAAGTATTCTTGTGAATTGTGTGATAAGAAGTTTACACGGCCTGGTTCTTTAAATAGACATAAGAGAAAACATACTGGCGATGAACTTTGGCAATGTCGAGTCTGTAGCAAATCATATTCACAATTTTCTCAACTTTCAGCCCATATGAAGACACACACTGAAGAGAAGTTTTcctgtaaattttgtaaacagaaatttacatattatcCTCAGTTGTCAGCCCACATGCAGGAACATATGGAAAAATAA
Protein Sequence: MSIKKESDLNDLSAGPVYSVADCWSTCLQEQLTNSSYSDPIKFSDKLPACVSETNWAKEIAPSSEQARPLKVEANEIQSSSSVTVDPATTVLAGCDETVEKVVFCTKFEETETQILSEYAPSTSGAPQLQTLDNLCKNGCQVCKEKLCEHIDGKSFQCSVCLQQFPIIAELTAHVRIHTEEKRYVCDFCEKSYIDENDLLMHTCSRTGEKSFPCRYCDKKFSTTHLLRSHLKRHNVNKPWGCRICNTSYTQSSHLWAHMRAHAGKKYCCKLCGEKFTWRSAFNVHMRRHNGDKLLRGKILSTDTKIHSAKKRSGKLCDKKFAESSSLNAHKKRHTTSNKFWQCEICKKSYTRSSNLSMHMKTHTAKKLSCNLCGKKFTQTSSLSAHTKKHSGDELLQCKICNKSYVQFSHLLAHMRIHYGEQFSCKFCKKRFARAYTLNAHMKRHTGKELWRCQICNKSYITSSLLKRHIKIHTGERFPCKVCNKEFTRSCSLSLHMKKHTGDEPWRCKICNKSFLTYQSFSGHMNIHTGERYSCKLCDKKFTWVSSLGLHMKRHNNVRWQCKICNKSYTQRSTLRMHMRMHAGEKYSCKLCDKEFKRSVSLKAHMKRHTGEKLWSCKICNKSYTTSSHLSNHLETHGEKFACKLCDKKFTWSATLNSHMKNHITDKPWQCKICNKSYKQSSSLSVHMKLHTGEKYSCELCDKKFTRPGSLNRHKRKHTGDELWQCRVCSKSYSQFSQLSAHMKTHTEEKFSCKFCKQKFTYYPQLSAHMQEHMEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00956448;
90% Identity: iTF_00956448;
80% Identity: iTF_00956448;