Mjur011861.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995236.1:1311491-1315712[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.041 9.5e+02 0.4 0.1 22 31 173 182 157 198 0.79 2 10 0.0067 1.6e+02 2.9 0.0 21 45 200 224 195 228 0.91 3 10 0.058 1.4e+03 -0.1 0.1 26 43 233 250 224 254 0.77 4 10 0.00061 14 6.3 0.2 21 43 256 278 245 284 0.82 5 10 0.044 1e+03 0.3 0.3 23 43 286 306 279 310 0.79 6 10 4.9e-05 1.2 9.7 0.2 19 45 310 336 301 339 0.86 7 10 0.00014 3.2 8.3 0.2 20 44 339 363 336 367 0.89 8 10 2.1e-05 0.5 10.9 0.0 21 45 368 392 363 400 0.86 9 10 0.18 4.2e+03 -1.7 0.1 21 44 396 419 392 424 0.74 10 10 0.0027 63 4.2 0.1 20 43 424 447 406 453 0.77
Sequence Information
- Coding Sequence
- ATGGCAGATAATCCCAAGGAGTATTTACTTCATACTGGTCTCTTAAAACCCAAGCAGGAAGTAGAAATCATAGTACCCAAGGAAGAAGTTATAGAAGATTTTTTAGTATTTAAGAAAGAAATAGTGCTTAAGGAAGAAATAGTAGATGTCATAGTACCTAAGCAGGAAATAGGAGAGGAGTTAGAAATAACCTTTGATAAAGACAGCAATGACTATATTCTACCTAAAGACGAGCCATCTTGTTCACATTTGGTACAATTGAATGAACAAAATGAAGTGAATATGGTAGTGCCTTATAAAACAGAGCCTTTCAACGATATTGCGCAACTACAAAAAGAACTACAAGTGTCTGATGATGGACACAATATAACAGACCAAAATATGTGTACAGGACTTACCTCCATAGAGATTAAAAGGGGGTGTAGCGCTGAGCCCTGCAGTGCTGCAGGCTCTTCAACACACAATTCTCCATTGGCAAAGAAATGTAGACCCCAAAGAGGTGGAGCTGCTAAGAAAAAGGGGCCACACACTTGTCATATTTGCGAAAAACAATTTAAATACAAAAGCTTTTTGGATCTACACATGAAGACTCACACTGGAGAGAAACCGTTTATTTGCAATCAATGTCCTGCATCATTCAAACACAAAAACACGTTAACTAGGCACATGAAATCCCACACCCGCGATAGTTTTTACACCTGTGACATATGTCAAGCGAAATTCACAGAAAAAAGCACTTTGAACAATCACACAAGGACTCACACTGGTGAAAAACCATATTCCTGTGAAATATGTCACGCAAAATTCACCCAACAAAGCACTTTAATCAGTCACACTAGGATACACACTCGTGAAAACCTTTACACCTGTGAAATATGCCAGACTAAATTTACTCAAAGGAGCACTTTGAATAATCATAGAAGGACACACACTGGTGAAAAACCGTATGCCTGTGATGTGTGTCAAGCTAAATTCAGACAAAAAAGTTCTTTACACAGCCACATAAAGACTCACACTAGTGAAAAACCGTTTACTTGTGGCCGATGTCAAGCAACGTTTAAACGAAGGAATATTCTAACCAGGCACATGAGATCTCACACTGGTGAAAAACCTTATTCTTGCGACATCTGCGACGCGAAATTTACTCAAAAAGGTAATTTGAACAGTCATTTGAGGACACACACTGGTGAAAGACCGTTTTCCTGTGATCAGTGTGAGGCTAAATTTGGAAAGAAATATGATTTGACCACCCATGTAATGCGGTCTCACACTGGTGAAAAGCCACATTCCTGTTATATATGTAACGCTAAATTTGTAGAGAAATATCATTTGAATAAACACACTTTGAAGTGTCACAGCGGTGAAAAAACTTGA
- Protein Sequence
- MADNPKEYLLHTGLLKPKQEVEIIVPKEEVIEDFLVFKKEIVLKEEIVDVIVPKQEIGEELEITFDKDSNDYILPKDEPSCSHLVQLNEQNEVNMVVPYKTEPFNDIAQLQKELQVSDDGHNITDQNMCTGLTSIEIKRGCSAEPCSAAGSSTHNSPLAKKCRPQRGGAAKKKGPHTCHICEKQFKYKSFLDLHMKTHTGEKPFICNQCPASFKHKNTLTRHMKSHTRDSFYTCDICQAKFTEKSTLNNHTRTHTGEKPYSCEICHAKFTQQSTLISHTRIHTRENLYTCEICQTKFTQRSTLNNHRRTHTGEKPYACDVCQAKFRQKSSLHSHIKTHTSEKPFTCGRCQATFKRRNILTRHMRSHTGEKPYSCDICDAKFTQKGNLNSHLRTHTGERPFSCDQCEAKFGKKYDLTTHVMRSHTGEKPHSCYICNAKFVEKYHLNKHTLKCHSGEKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954841;
- 90% Identity
- iTF_00954841;
- 80% Identity
- iTF_00954841;