Mjur011509.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995232.1:5869333-5875060[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.2e-05 0.001 19.8 3.1 1 23 295 317 295 317 0.98 2 12 0.2 9.4 7.3 1.1 5 17 422 434 419 440 0.88 3 12 0.0015 0.069 14.0 0.9 1 23 449 472 449 472 0.94 4 12 0.00053 0.025 15.4 1.3 1 23 476 498 476 498 0.98 5 12 0.0011 0.053 14.4 0.6 2 23 520 542 519 542 0.92 6 12 0.45 21 6.2 0.8 1 23 546 569 546 569 0.91 7 12 0.16 7.2 7.6 0.3 2 23 592 614 591 614 0.89 8 12 1.4e-05 0.00064 20.4 0.9 1 23 624 646 624 646 0.99 9 12 0.0011 0.053 14.4 1.2 2 23 665 686 664 686 0.96 10 12 0.00034 0.016 16.0 0.4 1 23 692 714 692 714 0.96 11 12 1.8 84 4.3 3.7 1 22 720 741 720 744 0.90 12 12 0.42 20 6.3 0.1 3 23 809 829 807 829 0.96
Sequence Information
- Coding Sequence
- ATGAAAAAAAAGATGGATCCACAAAATCAATGGGAAACAAATGTTGCTGGCAACACTGTAAATACAATAAAACAAGAAATCACCTCTAGCATAACATTAGACTTTGAACCTTTATATAACTATGGCAACATTTCTGAGGATAGTATGAAGAATTATCACATTTCTAATCTAGACTGTAGTATGAAAAATGATCAAGCCAATATTAAAGAGGAATTTATAACGCCTAACTTTGAAGATGATCCGCCAAATTATGAAACAGATCATGAAAATACTGAAAAATCATCACAAGATATAACCGAGGCTGTGTCTAACAAACTAGTGATGCATCTTGAAAGCATTACAGGACAAAGTGATTTCTCAAAGAATGCAGACGTGAAAATGGAACAACTGGAGAACTTGGCTGAAGAGTACCCGAGCATTGATGATGGGTCTACCATGGACAGTGATGAGGCCAGGGCTTTGAACAATGTTGAAGCATGCTTACAGGATGACATTGATGTTAAACATGAACGTGATGAGGTAAACCCAAAAGACGATTTACAAAGAGTTATCAAAGAGGAATCTGACATAACAGTAACTGAAACCAACCTGATATCAAATAAGGTAAATAATACAACCTCCACCATAACCAGTCCGCACTCAGGCATCATACAAGCTGAAACTACTAAAACACTAGTCATGGAAATACATCCCATGGTACGAGGTGGAAAAATACCAATGGCTCGGAATCCAGAAGAAATCTTACCCACAAATTATTCGACGGAAAATAATCTGTACGAAGAATCCTTCCAACTTAATTCTATAACTGGTAATGTATTATCGCTAGAACAAGAAGCTTATGGGTTACTAAAAGAAGGGCATTGTGATTATGTAGGCCAAGTACACCAGTGTGAAAAATGCCCCAAAACATATTCGAAATTACGAAGTTTAAAAGAGCACATGAAAGTCCACGATACGATAGAAAGGAGGGCGATGGGTGTTCTTAAAGGTATACAAACGAAAAAGGCGAATATGGAGAAAAGGTTATATGGTGGGCAGAAAAAGGTCAAAAAGATTGATGTCCATGCACTAAAGAAAAGAAACGAAAGGTCGGACAGGGCAGAGAACCGTGGTAAAGTAAAAGGTGACAAAAAATCCAATTCGAAAAAGGAAAGAAAAGAGAAATTGGCCATAATCAAAAAAGAAACTGAAGAAAAAATCCTTAACCTTAAAAAAGAGTTGGAAGAGACATCTACCGATGTACAAATGGAGGGCCACAAATGTATTTGTGGGAAAGTGTTTAAGAGGAAAACTAGTTTGCTTGCATGTTTGAGATCTCATGAAGTTTCCACAGATACTAACGTGTTCCAATGTATATCATGCACTAAACAGTTCAAAGATAAAGAAGAATTAGCAGCGCATAGACGACGGTTACACAGAAAAAGGTTCCCTTGCAAATTCTGCCCCACAGACTATAACACGCGTAAAGAACTATTCAAGCATCTCCAAATACACCAAAAAGTTCAACTAATGGAGTACAAAGTTATATCCGAATTTGTTAAAGGAAAACACAAATTAAGATGTTTTATGTGTTCCAAAAGTTTTTCGGAGCTATCAGATCTTAAATACCACGTCATGGACGATCATCAAGAACCGTACATTTGTCCTCATTGCAAGGGAACTTTCGCTAAAATTATTGATTTCGGAAATCATACTAAAGCTTTTCATCCAGAAGTAGAAGGCCAATCGGTTTTGGATGTATTGGAAGCATTTTCAAAGTTGATACAAGCTTGGAAGTGTGAAGATTGCAATGAGCAATTTCATGAGGCCGACAAATTTGCCATGCATCAAGTTGAAATACACAGCCCAGATGTAAAAGACAAGGACCAATTTCAATGTGAGGATTGCCGACGAGTCTTCATCAGTCAAAAAGGGTTGACATCTCATAAAAGGATACATGAAGTCCATTTTGGCGAAAGCTTAGAGGAAAGTGAATTTCAAGAAAAAGGAGTTATGTGCGTCGAATGTAGGAAGATATGCAAAGACATGAGTGCCTTAACTTCACATATGCGGTTGCATTCGCCAGAGAGAAAGTACCCTTGTAAATTCTGCGATTTCCGTTTCGCTACTCCCGAAAAGCTAAAAGCACATTCCGAAATCCATACAGGCGATATGAAATTCGTATGTTTTATATGCGAATACCAGTGCAGTTCAGAAAACAGGTTGGAACACCATAAGATGTCAATAAAACATGCGAATATGAAAGAGTATCTGTTAACAGGGAAACATTTGATAGAGGAAGAATCTGCTTCTAAAAAGAGAGAGTCGAAACAGGAACATAGAGAAGTCAAAAAGAGAAAAGAACATAAAGAGAAGATAAAGGAGCATAAAGAGAAGATAAGGGAAGAACCAAGTTGTTCCAAAGAAGAAGAAGTGGAAGTAATTTGTGATGTATGTGGTGATATGTTTGCGAGTGAGAAGAAAATGTTTGAACACAAGGCAACTCATCCGTTTATAGAATTCCCAAATGAAGACACACCTACTAGAATATTCTTTAAGTGA
- Protein Sequence
- MKKKMDPQNQWETNVAGNTVNTIKQEITSSITLDFEPLYNYGNISEDSMKNYHISNLDCSMKNDQANIKEEFITPNFEDDPPNYETDHENTEKSSQDITEAVSNKLVMHLESITGQSDFSKNADVKMEQLENLAEEYPSIDDGSTMDSDEARALNNVEACLQDDIDVKHERDEVNPKDDLQRVIKEESDITVTETNLISNKVNNTTSTITSPHSGIIQAETTKTLVMEIHPMVRGGKIPMARNPEEILPTNYSTENNLYEESFQLNSITGNVLSLEQEAYGLLKEGHCDYVGQVHQCEKCPKTYSKLRSLKEHMKVHDTIERRAMGVLKGIQTKKANMEKRLYGGQKKVKKIDVHALKKRNERSDRAENRGKVKGDKKSNSKKERKEKLAIIKKETEEKILNLKKELEETSTDVQMEGHKCICGKVFKRKTSLLACLRSHEVSTDTNVFQCISCTKQFKDKEELAAHRRRLHRKRFPCKFCPTDYNTRKELFKHLQIHQKVQLMEYKVISEFVKGKHKLRCFMCSKSFSELSDLKYHVMDDHQEPYICPHCKGTFAKIIDFGNHTKAFHPEVEGQSVLDVLEAFSKLIQAWKCEDCNEQFHEADKFAMHQVEIHSPDVKDKDQFQCEDCRRVFISQKGLTSHKRIHEVHFGESLEESEFQEKGVMCVECRKICKDMSALTSHMRLHSPERKYPCKFCDFRFATPEKLKAHSEIHTGDMKFVCFICEYQCSSENRLEHHKMSIKHANMKEYLLTGKHLIEEESASKKRESKQEHREVKKRKEHKEKIKEHKEKIREEPSCSKEEEVEVICDVCGDMFASEKKMFEHKATHPFIEFPNEDTPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00953860; iTF_00802235; iTF_01092416;
- 90% Identity
- iTF_00953860;
- 80% Identity
- -