Mhyp011205.1
Basic Information
- Insect
- Maniola hyperantus
- Gene Symbol
- -
- Assembly
- GCA_902806685.1
- Location
- NC:5505137-5509778[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.5e-06 0.00025 20.8 3.4 1 23 291 313 291 313 0.98 2 12 0.13 5.2 7.3 1.1 5 17 418 430 415 436 0.88 3 12 0.00098 0.038 14.0 0.9 1 23 445 468 445 468 0.94 4 12 0.00035 0.014 15.4 1.3 1 23 472 494 472 494 0.98 5 12 0.00075 0.029 14.4 0.6 2 23 516 538 515 538 0.92 6 12 0.29 11 6.2 0.8 1 23 542 565 542 565 0.91 7 12 0.1 4 7.6 0.3 2 23 588 610 587 610 0.89 8 12 9e-06 0.00035 20.4 0.9 1 23 620 642 620 642 0.99 9 12 0.0025 0.096 12.7 1.5 2 23 661 682 660 682 0.96 10 12 0.00074 0.028 14.4 1.0 1 23 688 710 688 710 0.95 11 12 1.2 46 4.3 3.7 1 22 716 737 716 740 0.90 12 12 0.24 9.1 6.5 0.1 3 23 812 832 810 832 0.96
Sequence Information
- Coding Sequence
- ATGGATCCACAAAATCAATGGGAAACATATGTTGCTGGCAACACTGTAAATACAATTAAACAAGAAATCACCTCTAGCATAACATTAGACTTAGAACCTGTATATAACTATGGCAACATTTCCGATGATAGtatgaaaaattatgacatttcaaaTCTAGAAGATAGTATGAAAATTGATCAAGCCAATATTAAAGAGGAATTCATAACACCTAACTTTGAAGATGAGCCGCCAAATTATGATGCAGATCATGAAAACACTGAAAAATCATCACAAGATATTACTGAGGCTGTGTCTAATAAACTAGTCATGCATCTGGAAAGTATTACAGGACAAAGTGATTTTTCAAAGAATGCAGATGTGAAAATGGAACAACTTGAGAACTTGGCTGAAGAGTACCCGAGCATTGATGATGGGTCTACCATGGACAGCGATGAGGCCAGGGCTTTGAACAATGTTGAAGCGTGCTTGCAGGATGACATTGACATTAAACATGAACGTGATGAGGTACATCCGAAAGACAATTTACGAAGAGTCATCAAAGAGGAATCAGATGTAACAGTAACTGAAACCAACCTGATATCAAATAAGGTAATCAATACAACCTCCACCATAACCAGTCCATACTCAGGCATCATACAAGCTGAAACTACAAAAACACTAGTCATGGAAATACATCCAATGGTACGAGGTGTAAAAATACCGATTGTTCGAAATCCAGAAGAAATTTTACCCACAAATTATTCTACAGAAAATAATTTGTACGAAGAATCCTTCCAACTTAACTCTATAACGGGTAATGTATTATCGCTAGAACAAGAAGCTTATGGGTTATTAAAGGAAGGACATTGTGATTATGTACGCAAAGTACACCAGTGCGAAAAGTGCCCTAAAACATATTCGAAATCACGAAGTTTAAAGGAGCACATGAAAGTCCACGATACGATAGAGAGAAGGGCGATAGGTGTTCTAAAAGGTTTACAGACGAAAAAGGCGAATTTAGAGAAAAGGTTGTATGGTGTGCAGAAAAGGGTGAAAAAAATTGATGTAAATGCGCTAAAGAAAAGAATGGAAAGGTCGGACAGGGCAGAGAATCGTGATAAAGTAAAGGGTGACAAAAAACCCGTTTCGAAAAAGGAAAGAAAAGAGAAATTGGCGACCATCAAAAAGGAAACTGAGGAGAAAATCCTTAACCTTAAAAAGGAGTTAGAAAAACCATCTACTGAAGTACAAATGGAGGGTCATAAATGTATTTGTGGGAAAGTATTTAAGAGGAAAACTAGTTTGCTAGCATGTTTGAGATCTCACGAAGTTTCCACAGATACGAACGTGTTCCAATGTATATCGTGCACTAAGCAGTTTAAAGATAAAGAAGAATTGGCAGCGCATAGACGACGGCTACACAGAAAACGGTTCCCTTGCAAATTCTGCCCTACAGACTATAACACGCGTAAAGAGCTATTCAAGCATCTCCAAATACACCAAAAAGTTCAACTGATGGAGTACAAAGTTATATCCGAATTCGTTAAAGGGAAACACAAATTAAGATGTTTTATGTGTTCCAAAAGTTTTTCGGAGCTATCAGATCTTAAATATCATGTTATGGACGACCACCAAGAACCGTATATTTGTCCTCATTGTAAAGGAACTTTCGCTAAGATTATTGATTTCGGAAATCACACTAAAGCTTTTCATCCAGAAGTGGAAGGGCAATCTGTTTTAGATGTATTGGAAGCATTTTCAAAGTTAGTTCAAGCTTGGAAGTGTGAGGATTGCAATGAGCAGTTTCATGAGGCCGATAAATTTGCGATGCATCAAGTTGAGATACACAGCCCAGATGTGAAAGACAAGGACCAGTTTCAATGTGAGGATTGTCGAAGAGTTTTCATAAGTCAAAAAGGGTTGACATCTCACAAAAGGATACATGAAGCTCATTTTGGCGAAAGCTTGGAGGAAAGTGAATTTCAAGAAAAAGGAGTGATGTGCGTCGAATGTAGGAAGATGTGCAAAGATATGAATGCCTTAACTTCACATATGCGTTTACATTCCCCGGAAAGAAAGCACCCTTGTAAATTCTGCGATTTTCGTTTCGCTACCCCCGAAAAGCTGAAGGCACATTCCGAAATCCATACAGGCGATATGAAATTCGTATGTTTCATATGCGAATACCAGTGCAGTTCAGAAAACAGATTGGAACACCACAAGATGTCGATAAAACATGGGAATATGAAAGAGTATCTGTTAACggggaaacatttgattgaggAAGAGTCTACTTCTAAAAAAAGAGAGTCAAAACAGGAAAATAGGGAAGTTAAAAAGAGAAAAGAacataaagaaaagattaaAGAGCATAGAGAGAAGATAAAAGAGCACAAAGAGAAGATAAGAGAAGAACCAAGTTGTTCCAAAGAGGAAGAAGTGGAAGTGATTTGTGATGTGTGTGGTGATATGTTTGCGAGTGAGAAGAAAATGTTTGAACACAAGGAAACTCATCCGTTTATAGAATTCCCTAATGAAGACACACCTACTAGGATATTCTTTAAGTGA
- Protein Sequence
- MDPQNQWETYVAGNTVNTIKQEITSSITLDLEPVYNYGNISDDSMKNYDISNLEDSMKIDQANIKEEFITPNFEDEPPNYDADHENTEKSSQDITEAVSNKLVMHLESITGQSDFSKNADVKMEQLENLAEEYPSIDDGSTMDSDEARALNNVEACLQDDIDIKHERDEVHPKDNLRRVIKEESDVTVTETNLISNKVINTTSTITSPYSGIIQAETTKTLVMEIHPMVRGVKIPIVRNPEEILPTNYSTENNLYEESFQLNSITGNVLSLEQEAYGLLKEGHCDYVRKVHQCEKCPKTYSKSRSLKEHMKVHDTIERRAIGVLKGLQTKKANLEKRLYGVQKRVKKIDVNALKKRMERSDRAENRDKVKGDKKPVSKKERKEKLATIKKETEEKILNLKKELEKPSTEVQMEGHKCICGKVFKRKTSLLACLRSHEVSTDTNVFQCISCTKQFKDKEELAAHRRRLHRKRFPCKFCPTDYNTRKELFKHLQIHQKVQLMEYKVISEFVKGKHKLRCFMCSKSFSELSDLKYHVMDDHQEPYICPHCKGTFAKIIDFGNHTKAFHPEVEGQSVLDVLEAFSKLVQAWKCEDCNEQFHEADKFAMHQVEIHSPDVKDKDQFQCEDCRRVFISQKGLTSHKRIHEAHFGESLEESEFQEKGVMCVECRKMCKDMNALTSHMRLHSPERKHPCKFCDFRFATPEKLKAHSEIHTGDMKFVCFICEYQCSSENRLEHHKMSIKHGNMKEYLLTGKHLIEEESTSKKRESKQENREVKKRKEHKEKIKEHREKIKEHKEKIREEPSCSKEEEVEVICDVCGDMFASEKKMFEHKETHPFIEFPNEDTPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954973;
- 90% Identity
- iTF_00954973;
- 80% Identity
- -