Basic Information

Insect: Maniola jurtina
Gene Symbol: -
Assembly: GCA_905333055.1
Location: HG995233.1:1905959-1909956[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.048 2.2 9.3 0.9 1 23 58 81 58 81 0.92

2 15 0.059 2.7 9.0 0.1 2 23 108 129 107 129 0.96

3 15 0.012 0.56 11.2 4.4 1 23 151 173 151 173 0.98

4 15 0.02 0.92 10.5 0.2 1 23 177 199 177 199 0.96

5 15 0.0025 0.12 13.3 1.2 1 23 204 227 204 227 0.93

6 15 0.38 18 6.4 0.7 3 23 312 333 310 333 0.93

7 15 0.099 4.6 8.3 0.1 2 23 358 379 357 379 0.96

8 15 2.4e-05 0.0011 19.6 0.5 2 23 402 423 401 423 0.97

9 15 0.27 13 6.9 1.2 1 21 427 447 427 449 0.95

10 15 0.0014 0.063 14.1 4.4 1 23 454 477 454 477 0.97

11 15 1 48 5.1 3.8 2 23 485 507 484 507 0.94

12 15 0.00062 0.029 15.2 0.5 2 23 515 537 514 537 0.95

13 15 5e-05 0.0023 18.6 0.4 1 23 543 565 543 565 0.98

14 15 0.00033 0.015 16.1 1.7 1 23 571 593 571 593 0.98

15 15 8.8e-06 0.0004 21.0 0.6 1 23 599 622 599 622 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.048	2.2	9.3	0.9	1	23	58	81	58	81	0.92
2	15	0.059	2.7	9.0	0.1	2	23	108	129	107	129	0.96
3	15	0.012	0.56	11.2	4.4	1	23	151	173	151	173	0.98
4	15	0.02	0.92	10.5	0.2	1	23	177	199	177	199	0.96
5	15	0.0025	0.12	13.3	1.2	1	23	204	227	204	227	0.93
6	15	0.38	18	6.4	0.7	3	23	312	333	310	333	0.93
7	15	0.099	4.6	8.3	0.1	2	23	358	379	357	379	0.96
8	15	2.4e-05	0.0011	19.6	0.5	2	23	402	423	401	423	0.97
9	15	0.27	13	6.9	1.2	1	21	427	447	427	449	0.95
10	15	0.0014	0.063	14.1	4.4	1	23	454	477	454	477	0.97
11	15	1	48	5.1	3.8	2	23	485	507	484	507	0.94
12	15	0.00062	0.029	15.2	0.5	2	23	515	537	514	537	0.95
13	15	5e-05	0.0023	18.6	0.4	1	23	543	565	543	565	0.98
14	15	0.00033	0.015	16.1	1.7	1	23	571	593	571	593	0.98
15	15	8.8e-06	0.0004	21.0	0.6	1	23	599	622	599	622	0.98

Sequence Information

Coding Sequence: ATGTATCAAGGTGAACCAAACAACCCCGGCCCAAGCAAACCCAACGAAGAACTTAATCCCAAACAGACGAAAACAAATGATAAATCGGAAATGGACCAACACAAAAATAATATCACAGTCGTATTGCAAAACACAAATGCAACGCCCTTCCAAAGACACGGCGAAATCGGATATGCTTGTTATTTTTGCAAAAACAACTACATAAATCCGAGAGACTTGAAAAAACATACAATTGAAACACATAAAGACAATGATATTGAGGAAATCTGTAAAGGAAAGCCTTTGCGGTACTATCTAGTGAAACTAGATATAACAGACTTAGTCTGTCGTATTTGCGATGAAGAAATATACACTCTGAAAGAATTGTTTAACCACCTAGAAAGTCATGGCAAAATAATATATAGGGATATAAATAATAGAATAATACCTTTCAGGTTCGACAGCCAAAAACATAAGTGTACGATTTGCTCGGTTGAATTTAGTAAATTCAAACAATTGCACGACCATCTCAACATCCATTTCAGGAATTATATTTGTAAATTTTGCAGCACTGGTTTCATTACACTAGGTATGCTCTCATCGCACGAAGCGAGCCATAAAATTGGCGTATACGAATGCGGTTATTGCGACAAAAAATTCAATACGGACAAGAACAAAAAGGTACACGAAACTGTTATGCACGCAGATGTCCCAAAGGATGCGAAAACGAAGAGCAAAAAACAAGAAAAAGAAGCAAACGATGCTAAAGGAGAATCCAAGAAACAAACCAAAGGTGAAGAATCGGACGAATGTAATGAAATAGATACAGATACAACTAAATCGGTCGAAATAAGTCAAAAGGGAGTAAGAGAAAAGCATCGTGAAAACATATTTGTCGTAGTAGCGAACACGAACGCAACGCCTTTCGGTAAATGTAACGACACTGGATACGGCTGTCAGTTTTGCGCACAAAAATATTTCAACCCTAAAGATCTAAAGGAACACACGTTAAACACTCATGCCAGTGAAGATTCCTTAAGCATTTGTAAACGAGTGGACTCATATATCGTTAAACTAGACATAACAAATTTAGTTTGTAAGATTTGCAATAGTAGTATCGAAGTTTGGGATAAACTGTTTAATCACTTGGAAAGCCACGGTAAAGTTATTCACAGAGACATTAACAACCACATAATACCGTTTCAGTTTGATGGCGATAAACTAGTCTGTACAATTTGCCCCAGAGTCTTCAACAAATTCAAACTTCTCCGCCAACATATGAACGTGCATTTCAGTAACTACACTTGTGATGTTTGCTACATCGGTTTCATCACGGAAAGAATGCGAACAGCTCACATGCAGTGCCATAAAACCGGCGTGTTCAAATGCAGCTTTTGCGAAAAAAGTTTCACTACCCACAGAAACAAGAAAGCTCACGAGAACATGGTGCACGTTAACTTGAACTACGCCAGTACTTGCGGCTTTTGTAAGGAGAAATTCAAGACTTACAAGCAAAAGCATGACCACTTATCATCTGCACACGGCATTACACGGAAGCAAGTTAGCTGTTCGGCTTGTAATAGATCCTTTGAGAGCCAGGCTAAGTTGACGAATCATGTTAAAAGAGATCACCTATTGGAGCGTCTTTATAAATGCGACGAATGTGACCGAGCGTTCTTCAGTAAAGTCGATTTAGGTCGGCATTTGGTGAAGCATAGCGGTTTGAAACAGTTTGAATGTAATTTGTGCATGAAAGCCTTTTTCTATAGAAAATCTTTAAGGGAACATATGCGTATTCATTCTAACGATAAGCGATTCAAATGCGATCGGTGTGGGAAGGCGTTCATTCAGAAGTGGAATTGGCTGGGGCATATGCGGAGGAAGCATTGCGTGGATATTATTACTATGCATAAAGTCATGTCAATAATAGGGCAATAA
Protein Sequence: MYQGEPNNPGPSKPNEELNPKQTKTNDKSEMDQHKNNITVVLQNTNATPFQRHGEIGYACYFCKNNYINPRDLKKHTIETHKDNDIEEICKGKPLRYYLVKLDITDLVCRICDEEIYTLKELFNHLESHGKIIYRDINNRIIPFRFDSQKHKCTICSVEFSKFKQLHDHLNIHFRNYICKFCSTGFITLGMLSSHEASHKIGVYECGYCDKKFNTDKNKKVHETVMHADVPKDAKTKSKKQEKEANDAKGESKKQTKGEESDECNEIDTDTTKSVEISQKGVREKHRENIFVVVANTNATPFGKCNDTGYGCQFCAQKYFNPKDLKEHTLNTHASEDSLSICKRVDSYIVKLDITNLVCKICNSSIEVWDKLFNHLESHGKVIHRDINNHIIPFQFDGDKLVCTICPRVFNKFKLLRQHMNVHFSNYTCDVCYIGFITERMRTAHMQCHKTGVFKCSFCEKSFTTHRNKKAHENMVHVNLNYASTCGFCKEKFKTYKQKHDHLSSAHGITRKQVSCSACNRSFESQAKLTNHVKRDHLLERLYKCDECDRAFFSKVDLGRHLVKHSGLKQFECNLCMKAFFYRKSLREHMRIHSNDKRFKCDRCGKAFIQKWNWLGHMRRKHCVDIITMHKVMSIIGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00953809;
90% Identity: iTF_00953809;
80% Identity: -