Basic Information

Insect: Maniola hyperantus
Gene Symbol: -
Assembly: GCA_902806685.1
Location: NC:5687762-5708764[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.1 44 4.4 1.6 1 23 28 51 28 51 0.92

2 15 0.13 5 7.3 0.1 3 23 79 99 77 99 0.95

3 15 0.067 2.6 8.2 5.6 1 23 121 143 121 143 0.98

4 15 0.012 0.47 10.5 0.2 1 23 147 169 147 169 0.96

5 15 0.0016 0.061 13.4 1.2 1 23 174 197 174 197 0.93

6 15 0.13 5.2 7.3 0.9 3 23 285 306 283 306 0.95

7 15 0.04 1.6 8.9 0.1 2 23 331 352 330 352 0.96

8 15 8.2e-05 0.0032 17.4 0.2 2 23 375 396 374 396 0.96

9 15 0.28 11 6.3 1.2 1 21 400 420 400 422 0.95

10 15 0.00084 0.033 14.2 4.4 1 23 427 450 427 450 0.97

11 15 0.82 32 4.8 2.9 2 23 458 480 457 480 0.90

12 15 0.00039 0.015 15.3 0.5 2 23 488 510 487 510 0.95

13 15 0.00035 0.014 15.4 0.6 1 23 516 538 516 538 0.96

14 15 0.00021 0.008 16.1 1.7 1 23 544 566 544 566 0.98

15 15 5.4e-06 0.00021 21.1 0.6 1 23 572 595 572 595 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.1	44	4.4	1.6	1	23	28	51	28	51	0.92
2	15	0.13	5	7.3	0.1	3	23	79	99	77	99	0.95
3	15	0.067	2.6	8.2	5.6	1	23	121	143	121	143	0.98
4	15	0.012	0.47	10.5	0.2	1	23	147	169	147	169	0.96
5	15	0.0016	0.061	13.4	1.2	1	23	174	197	174	197	0.93
6	15	0.13	5.2	7.3	0.9	3	23	285	306	283	306	0.95
7	15	0.04	1.6	8.9	0.1	2	23	331	352	330	352	0.96
8	15	8.2e-05	0.0032	17.4	0.2	2	23	375	396	374	396	0.96
9	15	0.28	11	6.3	1.2	1	21	400	420	400	422	0.95
10	15	0.00084	0.033	14.2	4.4	1	23	427	450	427	450	0.97
11	15	0.82	32	4.8	2.9	2	23	458	480	457	480	0.90
12	15	0.00039	0.015	15.3	0.5	2	23	488	510	487	510	0.95
13	15	0.00035	0.014	15.4	0.6	1	23	516	538	516	538	0.96
14	15	0.00021	0.008	16.1	1.7	1	23	544	566	544	566	0.98
15	15	5.4e-06	0.00021	21.1	0.6	1	23	572	595	572	595	0.98

Sequence Information

Coding Sequence: ATGGACCAACACAAGAATAATATTACAGTCGTAATACAAAACACAAATGCAACGCCCTTCCAAAGACACGGCGAAATCGGATATACTTGTTATTTCTGCAAAAACGACTATTTAAATCCGAAAGACTTGAAAAAACATACAATTGAAACCCATAACGATGATGATATTGAGGAAATTTGTAAAGGAAAACCTTTGCGTTACTACCTAGTGAAATTAGACATAACAGATTTAGCTTGTCGTATTTGCGATGAAGAAATATACACTCTCAAAGAATTGTTTGACCACCTAGAAAGTCACGGCAAAATAATATACAGGGatataaataatagaataataccTTTCAGATTCGACAATGAAAAACATAAATGTACGATTTGCTCGGTTGaatttagtaaattcaaacGGTTACACGACCACCTCAACACCCACTTTAGGAATTATATTTGTAAATTCTGTAGCACTGGGTTTATTACACTGGGTATGCTATCTTCGCATGAAGCGAGCCATAAAATTGGCGTATACGAATGCGGTTATTGTGACAAAAAATTCAATAcggacaaaaataaaaaggtgcACGAAACTGTTATGCATGCAGATGTCCCAAAGGATGCGAAAAGGAAGAGcaaaaaacaagaaaaagatGAGTGTACCGCAAACGATACTAAAGGAGAATCGAAGAAACAAACCATAGGTGAAGAATCTGATGAATCTACTGAAATAGATACAGATCCAATTAAATCTGCAGAATCGGGTCAAAAGGGAGTAAGAGAAAAGCATCGTGAAAACATATTTGTTGTAGTAGCGAATACGAACGCAACGCCTTTCGGTAAATGTAACGATACTGGATACGGCTGTCAGTTCTGCgcacaaaaatatttcaacccTAAAGATTTAAAGGAACACACATTAAAAACTCATGCGAGCAAAGATTCTTTAAGCATTTGTAAACGTGTGGACTCATATATTGTTAAACTAGACATAACGAATTTAGTTTGCAAGATTTGCAATAATAGTATCGAAGTTTGGGATAAATTGTTCAACCATTTGGAAAGCCACGGTAAAGCTATCCACAGAGACGTTAACAATCACATCATACCGTTTCAATTTGATGGCGACAGACTGGTCTGCGCAGTTTGCCCCAGAGTTTTCAACAAATTTAAACTCCTCCGCCAACATATGAATGTCCACTTCAGTAACTACACTTGCGATGTTTGCTATGTCGGTTTCATCACTGAGAGAATGCGAACCGCTCATATGCAATGCCATAAAACCGGCGTATTCAAATGCAGCTTCTGTGAAAAAAGTTTTACTACCCACAGAAACAAGAAGGCTCACGAAAACATGGTGCACGTTAACTTAAACTATGCGAGTACTTGCGGATTTTGTAAGGAGAAATTCAAGACTTACAAGCAAAAGCATGACCATTTATCCGCTGCGCATGGCATCACCCGGAAACAAGTTAGCTGTTCAGCTTGTAACAGGTCCTTCGAGAGTCAAGCTAAGCTGACGAATCATGTCAAAAGAGATCACCTATTGGAGCGTCTTTATAAATGTGACGAATGTGATCAAGCGTTCTTCAGTAAAGTTGATTTAGGACGGCATTTTGTGAAGCATAGTGGTTTGAAACAATTCGAATGTAATTTGTGCATGAAAGCCTTTTTCTATAGGAAATCTTTGAGGGAGCATATGCGTATTCATACGAACGATAAGCGATTCAAATGCGATCGGTGTGGGAAGGCATTTATTCAGAAATGGAATTGGCTGGGTCATATGCGCAGGAAGCATTGTGTCGAAATTACTGATAAAGTCGTGTCCATAATAGGTCAATAA
Protein Sequence: MDQHKNNITVVIQNTNATPFQRHGEIGYTCYFCKNDYLNPKDLKKHTIETHNDDDIEEICKGKPLRYYLVKLDITDLACRICDEEIYTLKELFDHLESHGKIIYRDINNRIIPFRFDNEKHKCTICSVEFSKFKRLHDHLNTHFRNYICKFCSTGFITLGMLSSHEASHKIGVYECGYCDKKFNTDKNKKVHETVMHADVPKDAKRKSKKQEKDECTANDTKGESKKQTIGEESDESTEIDTDPIKSAESGQKGVREKHRENIFVVVANTNATPFGKCNDTGYGCQFCAQKYFNPKDLKEHTLKTHASKDSLSICKRVDSYIVKLDITNLVCKICNNSIEVWDKLFNHLESHGKAIHRDVNNHIIPFQFDGDRLVCAVCPRVFNKFKLLRQHMNVHFSNYTCDVCYVGFITERMRTAHMQCHKTGVFKCSFCEKSFTTHRNKKAHENMVHVNLNYASTCGFCKEKFKTYKQKHDHLSAAHGITRKQVSCSACNRSFESQAKLTNHVKRDHLLERLYKCDECDQAFFSKVDLGRHFVKHSGLKQFECNLCMKAFFYRKSLREHMRIHTNDKRFKCDRCGKAFIQKWNWLGHMRRKHCVEITDKVVSIIGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00954890;
90% Identity: iTF_00954890;
80% Identity: -