Mjur005352.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Maniola jurtina
Gene Symbol
ham
Assembly
GCA_905333055.1
Location
HG995224.1:5312182-5376874[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.54 25 6.0 0.0 2 23 248 270 248 270 0.91
2 9 0.0012 0.054 14.4 1.2 1 23 277 300 277 300 0.93
3 9 2.9e-08 1.3e-06 28.8 0.1 1 23 306 329 306 329 0.96
4 9 2.5e-06 0.00012 22.7 1.7 1 23 335 357 335 357 0.95
5 9 8.9e-05 0.0041 17.9 6.1 1 23 363 385 363 385 0.99
6 9 0.00018 0.0083 16.9 0.4 2 21 393 412 392 413 0.94
7 9 2.1e-08 9.8e-07 29.3 0.7 1 23 804 826 804 826 0.98
8 9 7.6e-07 3.5e-05 24.4 1.7 1 23 832 855 832 855 0.97
9 9 8.3e-06 0.00039 21.1 3.3 1 23 861 883 861 883 0.98

Sequence Information

Coding Sequence
ATGAAGATGTCCGCGGCAGATAGCCAGGAGTCGGGCAGTCCTCCACCAAGCCCGACGGACTCCACAGCATCAGACCCCGCGCCCACCCTAGTCCACATCAAGCAGGAGGCCATGGCCCCTGGCACTGATATGAAAGAGTACTACAACGCTTTGGACTTTGGCCTGAACGACACATATCTCTCGAGCTACGACTACACACGCAACTATTTACAAAGACCTTTAGATCTACCGAATCAAAGGTTCCTAGAGTCCAAAAGTCCAGATAGAAACGAAGATTTTAATGACGAGAATGAGAAGTCGGAATTGAATTTGCCGAGTGAGTTGATGCTCAAGTCTGGTGGTGTATTCTCCAGAGGCAATATCCCTTGTGGAACTAAGTATGGACCATTCAACGGCAAATGGGTCGCGCAGCCTTTAGATAGAAGATACGCGTGGGCGGTCGTCGGCAAGAATGGAGTCCGGGGCTGGTTGGACGGCAGCGTAGACAAGTTCAACTGGATGAAGTTCGTCAACTCTACCAACTACCCGCACGATGTCAACTTACAGCATTTACTGCACGCTGGCCAAGTGTATTACAAGGTGACGCGAGATATTGCCTCGGGGCAGGAGTTATTGCTCGGCCCACGAACACCGCTGCCTCTACAAGATGTCTTTACTCCTCCAGGTCGTGAAGTTTCCAGCGTCAACTCATCTAGCTCACAGCCTTTGATTGAAGACGAGGAACGAGAGGAAACTGAACCACGTTGCTCCTTTTGTGACGCGCCTTATCCTAATATTGATGCACTTGACCGTCATTTGGTCCAAGCTCACGCGCAGCCTGCATCGGCGTTTCACTGCGAGCTGTGTAACCGAGCTTACAGCACCCGCGCGCTGTTGTTACGACACCGCGCCCTCACGCACACCGACATAAGAAAATACCCCTGCGAAAATTGTCCGAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCGCAGCACGTCGGTGCGCGCAGCCACGCGTGCCCCGAGTGCGGCAAGACCTTCGCGACCTCCTCCGGCCTCAAGCAGCACACGCACATCCACTCCAGTGTCAAGCCCTTCCAGTGCAAGGTGTGCTTTAAAGCTTACACTCAGTTTTCAAATTTGTGCCGCCACAAGCGAATGCATGTCGCATGCAGAGCTTTGGTAGAGTGTGGAAAATGCGGACAATCATTTACTTCCTACGCATCTCTCACTAAGCATAAAAGATTTTGTGATACAGCGACCGCAGCAAACGTTAACCTGCGAGGACAATTGCCGCAAGGACTATCACAAATACCATCTTTACCCAACGTCATGAATAATCCAAACAATACCAACCCATTCCCGATGTACAGAGGACCGGCGTTGCCTTTACCGTATAACACATTTGCTCACTATCCGGCATTATTTTCTGCTGCTGCAGCTGCTTGTCCCCCAGAATTCTTAAGTCCTCTCCTTTTCAATGTTCAAGGAGCAAGACTGGCCATGGAACATGACATGGCTATGAATGCTAATTTTGCAAAACAGGAAGGACGAATGTCAGTAAAAAGCATGGACAGCTCGACCTCACTCGAGGACATGAAGAAAAATATGGACGTTGATATTAAGATAAAAAAGAGAGATACTGATGACGAAAGGGTGACTACACCACAGAATATTTATGTAAAACAATCACCACCTTCCGCCGAAGAAGCCTCTTCTAAGCAACGACCATCACCAGTCATGCCGATGTCGACATCAATCGCACCTTTTAGATTTTCGAGGGATGAAATGAAACATAACTCTCCGTTTAATTTGTCAACGAAACATGAAGTGGGAACCAAATCTGTTTCACCGAGGCTACCTAAAGATTTAACGAAAGCTATGAAAGGGGACAACGGCAAAAAAGCTGGATATTCAGATGTCGAAGAAGAATCACGGAAGGAGCAAAATGACCAACCACTAGATTTATCAGTTACACGGAAGCAAAACGATAAAGAATCAGACATGGAGAATGAGGATAATGTCTCCATTCACAATTTATCAGTGAAATCTTACTCACCTTCTGAAAGCCCAGTAGATAGAGAAAGTAAAACTCCCGAAAACGATACTACAGACGTTGACGTCGAAGCAGTGGAACCAAAAAGGGAAGACTCTCCTATGGCATCACCTGCGCTAGCATTTCCGATGCCAGTGCATCCTCAGCACAACAACAGCCTTATCGACGCAATGTACCGCCCACGCTTCCCACAGTTTCACGCACCTTCCGATTCCCTTTTGAGCGCTTCGCATTCCCCTTACGTACCCAGCCCGTTTAATTTTTTATCCCCACTTCTCGGCACTGATGGGCCAGATAGACAACCGAGTGCGTATGCCAAGTTTCGAGATCTGAGCGCTGGTTCGGGAAAACTTCGAGATCGTTACGCGTGTAAGTTCTGCGGAAAGGTATTCCCGCGGAGTGCAAACTTGACCCGACATCTCCGTACTCATACAGGAGAACAACCTTACAAATGCAAGTACTGCGAGCGCTCGTTCTCGATATCTTCGAACTTGCAGCGCCACGTGCGAAACATACATAACAAGGAGCGGCCGTTTCGCTGTCCCTTGTGCGACAGGTGCTTTGGACAGCAGACGAATCTTGACCGGCATTTGAAGAAGCACGAGGCTGAAGGCGGGGATTCCCCTAGTTCAGCCGACACTGAACAGGACGCGTGTTTCGATGATATTCGATCGTTCATGGGCAAAGTGACTTGTTCTCCTGGAGCGGGTTCACCGTCTGGTACCTCTCCTCACGCGCCACACGCACCGCATCGTCCCTCAGCCTTGGCGATATCCACATAG
Protein Sequence
MKMSAADSQESGSPPPSPTDSTASDPAPTLVHIKQEAMAPGTDMKEYYNALDFGLNDTYLSSYDYTRNYLQRPLDLPNQRFLESKSPDRNEDFNDENEKSELNLPSELMLKSGGVFSRGNIPCGTKYGPFNGKWVAQPLDRRYAWAVVGKNGVRGWLDGSVDKFNWMKFVNSTNYPHDVNLQHLLHAGQVYYKVTRDIASGQELLLGPRTPLPLQDVFTPPGREVSSVNSSSSQPLIEDEEREETEPRCSFCDAPYPNIDALDRHLVQAHAQPASAFHCELCNRAYSTRALLLRHRALTHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCDTATAANVNLRGQLPQGLSQIPSLPNVMNNPNNTNPFPMYRGPALPLPYNTFAHYPALFSAAAAACPPEFLSPLLFNVQGARLAMEHDMAMNANFAKQEGRMSVKSMDSSTSLEDMKKNMDVDIKIKKRDTDDERVTTPQNIYVKQSPPSAEEASSKQRPSPVMPMSTSIAPFRFSRDEMKHNSPFNLSTKHEVGTKSVSPRLPKDLTKAMKGDNGKKAGYSDVEEESRKEQNDQPLDLSVTRKQNDKESDMENEDNVSIHNLSVKSYSPSESPVDRESKTPENDTTDVDVEAVEPKREDSPMASPALAFPMPVHPQHNNSLIDAMYRPRFPQFHAPSDSLLSASHSPYVPSPFNFLSPLLGTDGPDRQPSAYAKFRDLSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEQDACFDDIRSFMGKVTCSPGAGSPSGTSPHAPHAPHRPSALAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00943055;
90% Identity
iTF_00953751; iTF_01092300; iTF_00802126; iTF_00353358; iTF_00354379; iTF_00353325;
80% Identity
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