Basic Information

Insect: Hipparchia semele
Gene Symbol: ham
Assembly: GCA_933228835.1
Location: CAKOGE010000186.1:8107558-8159006[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.46 24 6.0 0.0 2 23 249 271 249 271 0.91

2 9 0.00099 0.052 14.3 1.2 1 23 278 301 278 301 0.93

3 9 2.5e-08 1.3e-06 28.8 0.1 1 23 307 330 307 330 0.96

4 9 2.1e-06 0.00011 22.7 1.7 1 23 336 358 336 358 0.95

5 9 7.6e-05 0.004 17.9 6.1 1 23 364 386 364 386 0.99

6 9 0.00015 0.0081 16.9 0.4 2 21 394 413 393 414 0.94

7 9 1.8e-08 9.6e-07 29.3 0.7 1 23 806 828 806 828 0.98

8 9 6.5e-07 3.4e-05 24.4 1.7 1 23 834 857 834 857 0.97

9 9 4.8e-05 0.0025 18.5 4.4 1 23 863 885 863 885 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.46	24	6.0	0.0	2	23	249	271	249	271	0.91
2	9	0.00099	0.052	14.3	1.2	1	23	278	301	278	301	0.93
3	9	2.5e-08	1.3e-06	28.8	0.1	1	23	307	330	307	330	0.96
4	9	2.1e-06	0.00011	22.7	1.7	1	23	336	358	336	358	0.95
5	9	7.6e-05	0.004	17.9	6.1	1	23	364	386	364	386	0.99
6	9	0.00015	0.0081	16.9	0.4	2	21	394	413	393	414	0.94
7	9	1.8e-08	9.6e-07	29.3	0.7	1	23	806	828	806	828	0.98
8	9	6.5e-07	3.4e-05	24.4	1.7	1	23	834	857	834	857	0.97
9	9	4.8e-05	0.0025	18.5	4.4	1	23	863	885	863	885	0.98

Sequence Information

Coding Sequence: ATGGGTTCTTTATTAGCGGCAGACAGCCAGGAGTCTGGCAGTCCTCCACCAAGCCCGACCGACTCCACAGCATCAGAGCCCGCGCCCACCTTGGTCCACATCAAGCAGGAAACTATGGCCCCTGGCACTGATATGAAGGAATACTACAGTACTCTGGACTTTGGCCTGAGCGACACGTATCTCGCTAGCTACGATTATGCACGAAACTATTTACAAAGGCCCTTAGATTTACCGAATCAAAGATTCTTGGAATCCAAAAGTCCAGATAGAAACGAAGATTTCAATGATGAGAACGAAAAGTCAGAGTTGAATTTGCCAAGCGAATTGATACTCAAATCTGATGGTGTATTCTCTAGAGTGAATATCCCTTGTGGTACCAAATACGGACCGTTTAATGGCAAGTGGGTCGGGCAACCTTTAGACAGAAGATACGCGTGGGCGgtgGTCGGCAAGAATGGTGTCCGCGGCTGGCTCGACGGCAGTGTGGACAAGTCCAACTGGATGAAGTTCGTCAACTCTACCAACTACCCGCACGATGTCAACTTACAGCATTTACTACACGCAGGCCAAGTGTATTATAAGGTGACAAGAGATATTGCATCAGGTCAGGAGCTACTGCTAGGTCCTCGGACACCGCTGCCGCTACAAGATGTCTACACTTCTCCAGGTCGTGAAGGTTCGAGCGTCAATTCCTCTGGTTCCCAGCCTGTAACTGAAGACGAGGAGCGGGAGGAAACTGAACCCCGTTGCTCCTTTTGTGACGCTCCTTACCCTAACATCGATGCACTAGACCGTCATTTGGTCCAAGCCCACTCGCAGCCAGCTTCAGCGTTCCACTGCGAGCTTTGCAACCGCGCCTACAGCACTCGTGCGCTTCTGTTACGTCATCGCGCGCTCACGCACACCGATATAAGAAAATACCCCTGCGAAAATTGTCCGAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCGCAGCACGTCGGCGCGCGCAGCCACGCCTGCCCCGAGTGTGGCAAGACCTTTGCCACCTCCTCCGGCCTCAAGCAGCACACGCACATCCACTCCAGCGTCAAGCCCTTCCAGTGCAAGGTGTGCTTCAAAGCTTACACTCAATTTTCGAATTTGTGCCGTCACAAGCGAATGCATGCGGCGTGCAGAGCTTTGGTAGAGTGTGGCAAATGCGGACAATCATTCACTTCCTATGCGTCTCTTACTAAGCATAAGAGATTTTGTGATACAGCGACTGCAGCAACAGTTAACCTACGAGGACAGTTGCCACAAGGATTACCACAAATACCATCTCTACCCAACGTCATGAATAATCCGAATAATACCAACCCGTTCCCGATGTACAGAGGACCGGGGTTGCCTTTACCATATAACACATTTGCTCACTATCCGGCTTTATTTTCTGCTGCCGCGGCCGCTTGTCCACCTGAATTTTTAAGTCCTCTACTTTTCAATGTTCAAGGCGCAAGACTGGCTATGGAACATGACATGGCTATGAATGCCAATTTTAATAAACAGGAAGGACGAATGTCGGTAAAAAGCATGGACAGTTCCACCTCACTTGAGGACAtcaagaaaaatatggacgttgaTGTTAAAATGAAAAAGAGAGATACCGATGATGAAATAAGGGTGACCACACCACAAAATATCTATGTAAAACAATCACCACCATCCGCTGAAGAAGCGTCTTCTAAACAACGACCGTCACCCGTAATGCCCATGTCGACACCAATCGCTCCATTTAGATTTTCAAGAGATGAAATGAAACATAACTCTCCgttcaatttttcaatgaaACATGAAGTAAGAACCAAATCTGTTTCACCAAGACTCCCAAAAGATTTGTCGAAAAATATGAAAGGTGATCACGATAAAAAGGTCAATTATTCTGACGCTGAAGAAGAAACGAGGAAGGAGCAAAATGATCAACCACTCGATTTATCAGTTACTAGAAAGCATAACGATAAAGAATCAGACATGGAAAACGATGATAATGTATCCCTTCATAATTTATCGGTGAAATCATACTCGCCATCCGAAAGTCCAGTGGATAGAGAAAGTAAAACTCCCGAAAACGAAACAACGGACGTTGACGTGGAAGCGGTGGAACCAAAAAGAGAAGACTCTCCCATGGTGTCACCTGCATTAGCATTTCCAATGCCAGTACATCCTCACCACAACAATAGCCTCATCGACGCGATGTACCGCCCACGCTTTCCACAGTTTCATGCACCATCCGATTCTCTTTTAAGCGCTTCACATTCCCCTTACGTTCCTAGCCCGTTCAATTTTTTATCCCCACTTCTAGGTACTGACGGTCCGGACAGACAACCGAGTGCATACGCGAAGTTTCGTGAACTGAGCGCCGGTTCGGGAAAACTTCGAGATCGTTACGCGTGCAAGTTCTGCGGGAAGGTATTCCCGCGGAGTGCTAACTTGACTCGACATCTCCGAACGCATACGGGAGAGCAACCTTATAAGTGCAAGTACTGCGAGCGTTCGTTCTCGATATCATCGAACTTGCAACGCCACGTGCGGAACATACATAACAAGGAGCGGCCGTTTCGGTGTCAACTGTGTGACAGATGCTTCGGACAGCAGACGAACCTTGACCGGCATTTGAAAAAGCACGAAGCCGAAGGTGGTGACTCGCCTAGTTCTGCTGACACTGAACAGGACGCGTGCTTCGATGACATTCGTTCTTTCATGGGAAAAGTGACTTGTTCTCCTGTGGCAGGTTCACCGTCAGGCACCTCTCCTCACGCGCAGCACGCGCCCCATCGACCCTCTGCGCTTGCGATCTCCACATAG
Protein Sequence: MGSLLAADSQESGSPPPSPTDSTASEPAPTLVHIKQETMAPGTDMKEYYSTLDFGLSDTYLASYDYARNYLQRPLDLPNQRFLESKSPDRNEDFNDENEKSELNLPSELILKSDGVFSRVNIPCGTKYGPFNGKWVGQPLDRRYAWAVVGKNGVRGWLDGSVDKSNWMKFVNSTNYPHDVNLQHLLHAGQVYYKVTRDIASGQELLLGPRTPLPLQDVYTSPGREGSSVNSSGSQPVTEDEEREETEPRCSFCDAPYPNIDALDRHLVQAHSQPASAFHCELCNRAYSTRALLLRHRALTHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHAACRALVECGKCGQSFTSYASLTKHKRFCDTATAATVNLRGQLPQGLPQIPSLPNVMNNPNNTNPFPMYRGPGLPLPYNTFAHYPALFSAAAAACPPEFLSPLLFNVQGARLAMEHDMAMNANFNKQEGRMSVKSMDSSTSLEDIKKNMDVDVKMKKRDTDDEIRVTTPQNIYVKQSPPSAEEASSKQRPSPVMPMSTPIAPFRFSRDEMKHNSPFNFSMKHEVRTKSVSPRLPKDLSKNMKGDHDKKVNYSDAEEETRKEQNDQPLDLSVTRKHNDKESDMENDDNVSLHNLSVKSYSPSESPVDRESKTPENETTDVDVEAVEPKREDSPMVSPALAFPMPVHPHHNNSLIDAMYRPRFPQFHAPSDSLLSASHSPYVPSPFNFLSPLLGTDGPDRQPSAYAKFRELSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCQLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEQDACFDDIRSFMGKVTCSPVAGSPSGTSPHAQHAPHRPSALAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00943055;
90% Identity: iTF_00954836;
80% Identity: -