Mjur011967.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995236.1:1483779-1488440[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.7e-05 0.0017 19.0 4.3 1 23 6 29 6 29 0.95 2 20 0.063 2.9 8.9 0.3 2 23 35 57 33 57 0.90 3 20 4.8e-05 0.0022 18.7 0.2 2 23 66 88 66 88 0.95 4 20 5.7e-06 0.00026 21.6 3.4 1 23 95 118 95 118 0.97 5 20 0.00023 0.011 16.5 0.4 2 23 126 147 125 147 0.97 6 20 1.5e-06 6.8e-05 23.5 1.5 2 23 156 178 155 178 0.96 7 20 5e-06 0.00023 21.8 1.2 1 23 184 207 184 207 0.97 8 20 1.2 54 4.9 1.6 1 19 215 232 215 237 0.86 9 20 0.00029 0.014 16.2 0.9 1 23 251 274 251 274 0.98 10 20 0.012 0.57 11.1 0.6 1 23 307 330 307 330 0.97 11 20 0.37 17 6.5 1.6 2 22 338 358 338 358 0.95 12 20 0.02 0.9 10.5 2.3 2 23 367 389 367 389 0.95 13 20 0.015 0.69 10.9 4.9 1 23 410 433 410 433 0.96 14 20 0.001 0.046 14.5 1.0 2 23 440 462 439 462 0.96 15 20 3e-05 0.0014 19.3 1.8 2 23 469 491 468 491 0.94 16 20 0.017 0.78 10.7 1.5 1 23 497 520 497 520 0.97 17 20 0.15 7.1 7.7 5.3 2 23 528 550 528 550 0.95 18 20 0.0014 0.066 14.1 0.5 1 23 557 580 557 580 0.96 19 20 0.0011 0.05 14.5 1.4 1 23 587 610 587 610 0.97 20 20 0.025 1.2 10.1 2.7 3 23 623 644 622 644 0.91
Sequence Information
- Coding Sequence
- ATGTCGGATCCAGATTACATCTGTGACTTCTGCAGCCGTTCGTTCACGAGGAAGTACAACCTTCGCACTCACATAGAGAACTGTCATCTAAACATGTCATGCCACTGCGCAATCTGCGATGTGGGATTTGGGAGCCCTACTGGTTTAGCCCTCCACTTAAGCCGTGGCCACAACAGCTTCAATCAAGGATTCCCACAATGCGATCTGTGTGGAAGAGTCTTTACAAGACGACAGAACATTATCAATCATATGATCAACGTACATTTGCAAACAAACCCACTATTTTCCTGCCACTTGTGTGATAAGACCTTTACTACAGAACGCAATATGAAACGACATTTGAATATACTACATAATCCAGCCATAGCATGCCTAAGATGCAATTATTGTCTAAGAACTTTCAGAGAAAGGGACGGCTTAATAGCACACCTACAATCTCATGAGAGAATGTTAACAGGACTAATAAAGTGTCAGCTGTGTAATAAAGTTTACACGAACAATAAAAATCTGAAACGGCATATGGAAATGAGTCATGGTGAAAAGGGCATTTTCAAATGCGACATTTGTCCTAAAGAGTACACGTCGAATCAAAGTCTAAGACGACACACGAAATCTGTACATCTTAATGGAAACAATGAAGAGTATACATGTGAATATTGCTATAAAGTTATAAACAGCAAGAATCTTGATAATCATAACGCTTTTTGTCACAAACGATTCGTTTTCAGCACATTTGAATCTACAAAACATTATTCATGTGAAATCTGTGATATGCAATACAATAAAGAGCGCTTGCTGAGGCAGCATATCAAAACTACCCACAGTTTTCAAGATTTTTACGAATATTGCAAGAAATCTTTATTAAAATCGACGGAGAGACTGGAGAAAAATAAAAAGATGAAAGAGAATTGTCCAATATACTCTTGTGAGTATTGTATTCAAGCATATCCAACGGTTTACGAACTGAAATACCACATGAGGTATTCACATGACAGGGAGTACAGTTTGGCGACTTGTAACGTGTGCTTCCAAAAGTTTTTCAGTAAGGAAACTATTAAAGAACACAGAAAAACATGTGTTCCACCGAAAAACGTTAACACATGCAGCCATTGTGATAAATTATTCACAGACGTTTCAAGTCTGGAGTTCCATACAAGAATCTTCCATCCCCAAGCACAAATCGCGGATTCAATAACATCCCCCTCGGAAGACGTGAAAGAATCTTGTCACAAATGCGTAATTTGCAACAGAATTTACTACAGCGAGAGATCTCTCAAACACCATTTGAAATTAAAACACACCACAGATGATCCTGTGAAGTGTGAATTGTGTGAGAAAATTTGCAACAACAAATACTATTTGGCGTCACATTTAAAAGTGGTTCACAATAACAAATCTAGTTCCAAATGTGACTACTGCGACAAAGAATTTAAATCGAAAAGGAACATACGGAGACATATAGAATACACACATTTGGGAATGCAGAGGTACAAGTGCATTGAATGTGAAACTCTTTTCAAAGAAAAGCGTAGTTTAAGAAAACACGTTAGAGTCAAGCATCCGAATTCAACAGCGTTCCCTCAATGCCATATTTGTGAAAAACGTTTCGAATCTGCAAAATCTTGTAAAACACATCTAAAACTACTCCATTCCTTCAATATGAACACACATCCATGTGATCTTTGCTCGGTTTCATTCGACTCTTTAGATTCTTTGAACATACATTTATCAACAAAACACTTGGCCGAAGATGAAATTTATAAATGTCAAGATTGCAACCTAGTGTTTAAAGGACAGGAACAATTTGGTAGACACTTTGAAACGTTTCATTCGAATCTACCCTCAGTTAAAAAAAGTTTGCCGCGTTGTATCATTTGCATGAAAGATTTTAGTACACGCAAAACTCTTAAGCGACATATTAAGAAGTTTCATAATGATTTTAATGTTGATGAGTTGGCCACTTATGGGTCCAAAAAGCGTGTATTCAACGTCGACTGTGACGAATGCATTAAGAATTTCAATGACGACTTTTACTTTGGGATTTATTTAAAGTTAAAGCATTTACGGGAGTCTATAATATTTAAGTGCGAAACGTGTAAATGTTCCTACAATGCTTTGGAATTCGCTATACAAAGATATAAGTTAAATTTCGATGCATCACAAACTAAGTTGTATCTAAGCGAATTGTGCACTACAGAGATGAGTGATGATTCAAAAGTTGATTCATTAGAAGCAATGGAACCTGAAAGCACTACGACTGATATCAAAGTAGAAACTGTTGAAATATCAGATGAAAGTATGGATGTTAAAGTCGAAGAAGATGATATTAAGATGTTTGATGAATTCGCTTCGAGATACGGTCATAAAATTGGGGCTTTGTCTCCATAA
- Protein Sequence
- MSDPDYICDFCSRSFTRKYNLRTHIENCHLNMSCHCAICDVGFGSPTGLALHLSRGHNSFNQGFPQCDLCGRVFTRRQNIINHMINVHLQTNPLFSCHLCDKTFTTERNMKRHLNILHNPAIACLRCNYCLRTFRERDGLIAHLQSHERMLTGLIKCQLCNKVYTNNKNLKRHMEMSHGEKGIFKCDICPKEYTSNQSLRRHTKSVHLNGNNEEYTCEYCYKVINSKNLDNHNAFCHKRFVFSTFESTKHYSCEICDMQYNKERLLRQHIKTTHSFQDFYEYCKKSLLKSTERLEKNKKMKENCPIYSCEYCIQAYPTVYELKYHMRYSHDREYSLATCNVCFQKFFSKETIKEHRKTCVPPKNVNTCSHCDKLFTDVSSLEFHTRIFHPQAQIADSITSPSEDVKESCHKCVICNRIYYSERSLKHHLKLKHTTDDPVKCELCEKICNNKYYLASHLKVVHNNKSSSKCDYCDKEFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRVKHPNSTAFPQCHICEKRFESAKSCKTHLKLLHSFNMNTHPCDLCSVSFDSLDSLNIHLSTKHLAEDEIYKCQDCNLVFKGQEQFGRHFETFHSNLPSVKKSLPRCIICMKDFSTRKTLKRHIKKFHNDFNVDELATYGSKKRVFNVDCDECIKNFNDDFYFGIYLKLKHLRESIIFKCETCKCSYNALEFAIQRYKLNFDASQTKLYLSELCTTEMSDDSKVDSLEAMEPESTTTDIKVETVEISDESMDVKVEEDDIKMFDEFASRYGHKIGALSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00953744;
- 90% Identity
- iTF_00953744;
- 80% Identity
- -