Mhyp012088.1
Basic Information
- Insect
- Maniola hyperantus
- Gene Symbol
- -
- Assembly
- GCA_902806685.1
- Location
- NC:4500000-4503578[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.1e-05 0.00079 19.3 4.0 1 23 6 29 6 29 0.95 2 19 0.045 1.7 8.8 0.3 2 23 35 57 33 57 0.90 3 19 4.6e-05 0.0018 18.2 0.2 2 23 66 88 66 88 0.95 4 19 3.8e-06 0.00014 21.6 3.4 1 23 95 118 95 118 0.97 5 19 0.00039 0.015 15.3 0.1 2 23 126 147 125 147 0.97 6 19 3.8e-06 0.00015 21.6 1.2 2 23 156 178 155 178 0.96 7 19 3.2e-06 0.00012 21.8 1.2 1 23 184 207 184 207 0.97 8 19 0.00096 0.037 14.0 1.2 1 23 252 275 252 275 0.98 9 19 0.18 7 6.9 1.8 1 21 308 328 308 331 0.96 10 19 0.25 9.5 6.5 1.6 2 22 339 359 339 359 0.95 11 19 0.014 0.54 10.4 2.3 2 23 368 390 368 390 0.95 12 19 2.2 84 3.5 9.4 4 23 411 434 409 434 0.87 13 19 0.00016 0.0063 16.4 1.3 2 23 441 463 440 463 0.96 14 19 2e-05 0.00076 19.3 1.8 2 23 470 492 469 492 0.94 15 19 0.00042 0.016 15.1 1.5 1 23 498 521 498 521 0.98 16 19 0.1 3.9 7.7 5.3 2 23 529 551 529 551 0.95 17 19 0.00094 0.036 14.1 0.5 1 23 558 581 558 581 0.96 18 19 0.001 0.039 13.9 1.4 1 23 588 611 588 611 0.97 19 19 0.017 0.64 10.1 2.7 3 23 624 645 623 645 0.91
Sequence Information
- Coding Sequence
- ATGTCGGATCCAGACTACATCTGTGACTTCTGCAGCCGATCGTTCACGAGGAAATACAACCTCCAAACTCATATAGAGAACTGCCATCTAAACATGTCATGCCACTGCGCGATCTGTGATGCGGGATTTGGGAGCCCCACTGGTTTAGCGCTCCACTTAAGCCGGGGCCACAACAGCTTTAATCAAGGATTTCCAGAATGCGATCTGTGTGGAAGGGTCTTTACAAGACGACAGAACATTATAAATCATATGATCAACGTCCATTTGCAAACAAACCCATTATTTTCTTGTCACTTGTGTGACAAGACTTTTACTACAGAACGTAATATGAAAAGACATTTAAATATCCTACATAACCCTGCCGTAGCATGCCTAAGATGCAATTATTGTTTACGAATTTTCAGGGGAAGGGACGGGTTAATAGCACACATACAATCTCATGAAAGAACATTAACAGGACTGATAAAATGTCAGATGTGTGAAAAAATTtacacaaacaataaaaatctgAAACGTCACATGGAAATGAGTCACGGGGAAAAGGGGATTTTCAAATGCGAAATCTGTCCCAAAGAGTACACGTCGAATCAAAGTCTTAGACGGCACACGAAATCTGTGCATCTTAATGGAAACAACGAAGAGTATACTTGCGAATATtgctataaaattataaacggCAAGAATCTTGATAGTCATAACGCTTTTTGTCACAAACGACTCGGTTTCGCCACATTTGAGTCCACTAAACATGATTATTCGTGCGAATTGTGCGATATGCGATACAATAAGGAGCGCTTGTTGAGGCAGCACGTCAAAACTACCCACACTTTCCAAGATTTTTACGAATATTGCAAGAAATCGTTGATAAAATCGACAGAGAAACTcgagaaaaataaaaagaagaaagaGAATTGTCAATTATACTCTTGCGAATATTGTATTCAAGCATATCCAACGGTTTACGAATTGAAATATCATATGAGGTGCTCACATGACAGGGAATATAGTTTGGCAACTTGTAACGTGTGTTTCCAAAAGTTTTTCAGTAAGGAAACTATTAAAGAACACAGAAAAACATGTGTTCCACCGAAAAACGTGAACACGTGCAGCCATTGCGATAAATTATTCACAGACATTTCGAGTCTGGAATTCCATACAAGGATTTTCCATCCCCAATCACAAATTGCAGATTCAATAACATCTACCTCAGAAGACGTGAAGGAATCTTGTCACAAATGTATACATTGCAACAGAATTTACTACAGCGAACGATCTCTCAAACACCATTTGAAATTAAAACACACAATAGATGACCCAGTACAGTGTAAATTGTGCGACAAAATTTgcaacaacaaatactatttgGCGTCCCATTTAAAAGTGGTTCACAATAACGAATCTAGTTCCAAATGTGACTATTGTGACAAGGAATTTAAATCGAAAAGGAACATACGAAGGCATATCGAATACACGCATTTGGGAATGCAGAGATACAAGTGCGTTGAGTGTGAAACTCTTTTTAAAGAAAAGCGCAGTTTAAGAAAACATGTTAGAGTCAAACATCCGAATTCCACCGCGTTCCCTCAATGTCACATTTGTGAAAAACGTTTCGAATCCGCCAAATCTTGCAAAACACATCTAAAACTACTCCATTCATTCAATATGAACACACATCCTTGCGATCTTTGCTCGGTCTCGTTCGACTCTTTAGATTCTTTGAACATACATTTATCGACGAAACATTTGGCGGAAGACGAGATTTATAAATGTCAAGAGTGCAACCTAGTTTTCAAAGGACAAGAACAATTCGGTAGACACTTCGAAACGTTTCATTCAAATTTACTTACAGTCAAAAAAAGCTTACCGCGTTGTATAATTTGCATGAAAGATTTCAGCACGCGCAAAACTCTTAAGCGACACATTAAAAAGTTTCACAATGATTTTAATGTGGACGAATTGGCTACATATGGGTCCAGAAGACGTGTTTTCAACGTCGATTGTGGGGAATGTATTAGGAATTTTAACGACGACTTTTACTTTGGGATCTATTTGAAGACAAAGCATTTCCGGGAATCTATAATATTCAAGTGCGAATCGTGTAAATGTTCGTACAACTCTTTGGAGTTCGCTATACAAAGATATAAGCTGAATTTTGATGCTTCACAAACTAAGTTGTATCTAAGCGAGTTATGTACTACAGAGATGAGTGATGATTCAAAAGTTGATCATTCAGAAACGATGGAACCCGAGAGTACCACTAATGACATCAAAGTAGAAACAGCTGAAATGTCAGATGATGAAATGTTAAGTTATGTTAAAGTTGAAAGCGATGATGACATTAAGGTGTTCGATGAATTTAGTGCGAGATACGGTCATAAAATTGAGCCTGTTTCTCCATAA
- Protein Sequence
- MSDPDYICDFCSRSFTRKYNLQTHIENCHLNMSCHCAICDAGFGSPTGLALHLSRGHNSFNQGFPECDLCGRVFTRRQNIINHMINVHLQTNPLFSCHLCDKTFTTERNMKRHLNILHNPAVACLRCNYCLRIFRGRDGLIAHIQSHERTLTGLIKCQMCEKIYTNNKNLKRHMEMSHGEKGIFKCEICPKEYTSNQSLRRHTKSVHLNGNNEEYTCEYCYKIINGKNLDSHNAFCHKRLGFATFESTKHDYSCELCDMRYNKERLLRQHVKTTHTFQDFYEYCKKSLIKSTEKLEKNKKKKENCQLYSCEYCIQAYPTVYELKYHMRCSHDREYSLATCNVCFQKFFSKETIKEHRKTCVPPKNVNTCSHCDKLFTDISSLEFHTRIFHPQSQIADSITSTSEDVKESCHKCIHCNRIYYSERSLKHHLKLKHTIDDPVQCKLCDKICNNKYYLASHLKVVHNNESSSKCDYCDKEFKSKRNIRRHIEYTHLGMQRYKCVECETLFKEKRSLRKHVRVKHPNSTAFPQCHICEKRFESAKSCKTHLKLLHSFNMNTHPCDLCSVSFDSLDSLNIHLSTKHLAEDEIYKCQECNLVFKGQEQFGRHFETFHSNLLTVKKSLPRCIICMKDFSTRKTLKRHIKKFHNDFNVDELATYGSRRRVFNVDCGECIRNFNDDFYFGIYLKTKHFRESIIFKCESCKCSYNSLEFAIQRYKLNFDASQTKLYLSELCTTEMSDDSKVDHSETMEPESTTNDIKVETAEMSDDEMLSYVKVESDDDIKVFDEFSARYGHKIEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954821;
- 90% Identity
- iTF_00954821;
- 80% Identity
- -