Basic Information

Insect: Maniola jurtina
Gene Symbol: -
Assembly: GCA_905333055.1
Location: HG995223.1:2876676-2881411[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0058 0.27 12.2 1.5 2 20 157 175 156 177 0.91

2 13 0.00086 0.04 14.8 0.1 2 23 211 232 210 232 0.97

3 13 2.5e-06 0.00011 22.8 4.4 1 23 239 261 239 261 0.97

4 13 0.00016 0.0075 17.0 1.2 1 23 292 314 292 314 0.99

5 13 1.9e-05 0.0009 19.9 3.2 2 23 322 343 321 343 0.94

6 13 1.7e-06 7.8e-05 23.3 0.1 1 23 349 371 349 371 0.98

7 13 4.6e-06 0.00021 21.9 1.5 3 23 379 399 378 399 0.99

8 13 1.4e-05 0.00064 20.4 1.3 1 23 405 427 405 427 0.96

9 13 3.5e-05 0.0016 19.1 0.7 1 23 433 455 433 455 0.96

10 13 2.4e-05 0.0011 19.7 1.4 2 23 462 483 461 483 0.96

11 13 0.18 8.2 7.5 8.5 1 23 489 511 489 511 0.98

12 13 2.6e-06 0.00012 22.7 1.1 1 23 517 539 517 539 0.99

13 13 7.6e-05 0.0035 18.1 0.7 1 23 545 567 545 567 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0058	0.27	12.2	1.5	2	20	157	175	156	177	0.91
2	13	0.00086	0.04	14.8	0.1	2	23	211	232	210	232	0.97
3	13	2.5e-06	0.00011	22.8	4.4	1	23	239	261	239	261	0.97
4	13	0.00016	0.0075	17.0	1.2	1	23	292	314	292	314	0.99
5	13	1.9e-05	0.0009	19.9	3.2	2	23	322	343	321	343	0.94
6	13	1.7e-06	7.8e-05	23.3	0.1	1	23	349	371	349	371	0.98
7	13	4.6e-06	0.00021	21.9	1.5	3	23	379	399	378	399	0.99
8	13	1.4e-05	0.00064	20.4	1.3	1	23	405	427	405	427	0.96
9	13	3.5e-05	0.0016	19.1	0.7	1	23	433	455	433	455	0.96
10	13	2.4e-05	0.0011	19.7	1.4	2	23	462	483	461	483	0.96
11	13	0.18	8.2	7.5	8.5	1	23	489	511	489	511	0.98
12	13	2.6e-06	0.00012	22.7	1.1	1	23	517	539	517	539	0.99
13	13	7.6e-05	0.0035	18.1	0.7	1	23	545	567	545	567	0.97

Sequence Information

Coding Sequence: ATGGCTTCTTCCGACATAAAATTCGCCCCGTACAGAAAATGTTGTCGTACTTGTTTGAAAGAAGATTCTTTGATGTTTGATCTATTTCTTGAAAGAATAGAATCCTCAGGCACCAACATAGCTGATATGCTTATATCATGCTCCAAATTAAACATACGAAAGGATGATTTCCTTCCAAATCAAATATGTAGGTACTGCTTCAAATCCCTCTTAGCTTTTTCACACTTCAGCATAATGGCACAAAAGGCTGAAAACAAACTCAAAGAAGCAATGTTAATAAACAATGAAATCAAAGAAAATCATTCTTCTGATGATGATGAAATAGAAGTCAAAAGGGAAAATGTTGATCATGAAAACATATTTTTCGAAACTTGTGAAGATTATTTTGAAAATGACAGCATAAGTGTAGATGAAAATAAAAATTCTGAACTATATAATGAAGAGCTTAAACTGGAAAACTCAAAACTGAATTGTGCTTATTGTAAAAAACATTTCAGTAAACTATCTAAACTGAAACTACATGAAGAAACATGTACTGAAACAAAACAGAATAGGAATGGTCTACCTTTAACAATGAATGATGAAAGTTTAGATTTAAGTGTAAAGAATGAATCAAACAATATAGATTTGACATGTGATATTTGTTCTTCAGGATTTGAATCAAAGGACTTGTTATCAGCACATATAAAAAGTCATGGAGAGAAAGATCGAATGTACTCTTGCGAAGAATGTAACAAAGTATTTAAGAAAAATAGCCATTTAAAAAGACATAAAACAATTCATAAAGACAAATTTCCACATGTTGATCCGTTAAATATAATTACACCTAAAGAAAACGTGGATACAAATATATTATGTGAACCAAAGGATGAGTTCAAATGCAGCAAATGTCTGTTAGCATTCAAGAGTATTAACTCACTCTCTGCTCACATGAGGAAGCATACAGAGAAAGGTCGAATTTTATCTTGCAAGGAATGCAATAAAGTGTTTAAAAAGCTCAGTCATTTAAAACGACATGAAATACAACATGGGATTAACTGTCCGTTCAAATGTAACGTTTGTCCAAAAGCATTTCCAACGAAAGATGCCTTAGAAGAACATGTAAATAAACACAGAGGGGTAAAACCTCACGGATGCCCGGTTTGTGATAAGAGATTCTCTCATTTGTCAACATTAACGACCCATATAAAATTACACACTCTTGAAAAAGTGTACTTATGTCCGTATTGTGGTAAAAAGATGAACTCTAGCACGAATTTGAAACAGCACATGATGAGACATACTGGATTGAAGAAATTTGCTTGTACATTTTGTCCTAAAAGATTTGTCAGCAAAGGGGAACTAAAATCGCACACAGTCACGCATACCGGGGAACGGTCGTCCACTTGCGATCAGTGTGGAGCTACCTTTACCAAGAGCAGCTCACTGACCAAGCATAAAATACGACATTTGGGCTTAAAGCCACATCAGTGTGGAACCTGTTTAATGAGATTCTCTTGCAAAGATCACTTGAAAAGGCATTACCGCATTCACACTGGCGAAAAGCCGTACAAGTGCGACTTGTGTGAGCGCGCCTTTACCCAGAGCAACGATCTAGTGAAACATCGCCGCTCACACTTGGGAGACAAGATATATAAATGCTCCCAATGTACGGAGAGTTTTCGTCTCAACGCGGAGCTGCGTCAACACATTTCGGAGCACTTTATAACCTCTCAATCACATACAGTGAATGCTTCCAAGGAGCCGCCGATAGATAGCGCTGGTAATAAGGACTTTTTGAAACCCCCCTCTGCTGTAATCGGGACCAATAATGATGATATTACACAAACAAATAATTCTAATGAAATGTGA
Protein Sequence: MASSDIKFAPYRKCCRTCLKEDSLMFDLFLERIESSGTNIADMLISCSKLNIRKDDFLPNQICRYCFKSLLAFSHFSIMAQKAENKLKEAMLINNEIKENHSSDDDEIEVKRENVDHENIFFETCEDYFENDSISVDENKNSELYNEELKLENSKLNCAYCKKHFSKLSKLKLHEETCTETKQNRNGLPLTMNDESLDLSVKNESNNIDLTCDICSSGFESKDLLSAHIKSHGEKDRMYSCEECNKVFKKNSHLKRHKTIHKDKFPHVDPLNIITPKENVDTNILCEPKDEFKCSKCLLAFKSINSLSAHMRKHTEKGRILSCKECNKVFKKLSHLKRHEIQHGINCPFKCNVCPKAFPTKDALEEHVNKHRGVKPHGCPVCDKRFSHLSTLTTHIKLHTLEKVYLCPYCGKKMNSSTNLKQHMMRHTGLKKFACTFCPKRFVSKGELKSHTVTHTGERSSTCDQCGATFTKSSSLTKHKIRHLGLKPHQCGTCLMRFSCKDHLKRHYRIHTGEKPYKCDLCERAFTQSNDLVKHRRSHLGDKIYKCSQCTESFRLNAELRQHISEHFITSQSHTVNASKEPPIDSAGNKDFLKPPSAVIGTNNDDITQTNNSNEM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00953742;
90% Identity: -
80% Identity: -