Mjur011670.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Maniola jurtina
Gene Symbol
-
Assembly
GCA_905333055.1
Location
HG995236.1:5134327-5140431[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00023 0.01 16.6 1.5 1 23 292 314 292 314 0.99
2 14 0.00013 0.006 17.3 3.2 1 23 534 556 534 556 0.98
3 14 0.48 22 6.1 2.0 6 23 567 584 565 584 0.90
4 14 1.4e-06 6.4e-05 23.5 3.8 1 23 590 612 590 612 0.99
5 14 2.1e-05 0.00096 19.8 5.7 1 23 618 640 618 640 0.99
6 14 0.0015 0.07 14.0 4.6 1 23 646 668 646 668 0.98
7 14 1.1e-05 0.0005 20.8 4.7 1 23 674 696 674 696 0.99
8 14 1.3e-05 0.00059 20.5 2.4 1 23 702 724 702 724 0.99
9 14 4.8e-05 0.0022 18.7 3.7 1 23 730 752 730 752 0.99
10 14 2.4e-05 0.0011 19.7 4.5 1 23 758 780 758 780 0.99
11 14 7.2e-06 0.00033 21.3 2.9 1 23 786 808 786 808 0.99
12 14 1.7e-05 0.00077 20.1 3.4 1 23 814 836 814 836 0.98
13 14 4e-06 0.00018 22.1 2.6 1 23 842 864 842 864 0.99
14 14 5.2e-06 0.00024 21.7 2.7 1 23 870 892 870 892 0.99

Sequence Information

Coding Sequence
ATGCGTTGTTGTGTGCCATTCTGCACAAATACTCCCACCAATGTGTCAACATCTGAGTCGAAGGGGATCAGTTTTCACGCTCTCCCCAGTGATGTGTGTCTGCGCGCTGCTTGGCTCAGAGCCCTCGGCAAACAACACAGTCAGCTACCAAACTCTGCTGTGGTCTGCTCACAGCATTTTCTTGATGATGAAATTTATGAAACAGAAAGTGGCTTAAGGCAGATTGCTACTGGTGCTGTTCCTTCAACAGTGCAGGTTTGCATGATATGCCTAGACACTGACAGCAAGCTGTATCCAATGAGTAAACACAAATTGGAAGAAGCATATGAGCGGTTAACAGGATATCCATTGTATGATCAAGGAAACCTGAAACGAACACTTTGTGTAAAATGTGCTCAGAGACTAATAAACTTTAGTAGATTCAGAGACAATAGCTTGAGAGCCCGTGCACTGATGATGGACTTAGTTGAAAAACATGAACTAATAACACGGCGACATATCAAAGGGATAAACCGCACAAAGAACCAACTAAAGAGTAATTTTGTGGTGAAAACTCTAGGACCTGACCACTGTGACTTATACATACTGGACTCCTCAGACAAACAGACAGAATCAGAGCCAATCAAAAGAGAGAATGAAGAAAGTTATGACTCGCCGGTTGATGAAGACATGGAAGTGGCAGAGGAAGATGACGATACTGCAGACAATGTCAATGATGAGTTTGTTGCATGTAACGAGGAGTGCTTCTCTGACGATAGCATAATGTTGGAAACAAAGCTGCTGGATGATGTTATTTGCAAAGCTCTGGAGAACCCAGTATTTGCAGAACAAGTGGCTGAAATACCGGATTTGTTGAAGTGTGAAAGTGCTGCCTTCCAATGTACTTTATGTTCTGAGGAGTTTGTTAGTGAACATGCGTACATGCAACATATGCGCATGCATGACCAGCAGAACAGTGACGGAAATGCTGACTGTAGCACGTCTCAAGTATGCAAGCCTCATACAGCCGTGAGCTCCTCACACTCTCCACACTTCACTGAGAACAAGCAGGCCATTCCTCTGAGCCAGGCCTCGAGCCTGTCTGTACACAGCCCGTCTGCACACTCACCTCAAACTGCAGTCGCTCCTCTGTCCGCGAGACTTGCGACGAGTAACGGAAACAAAGTGCAAGCTGAAGACGCCGATACAGTCCAGAAGAGTAAACCACTATTTAAAATTAACAATGTCGAATTAAACAACCAACTATTTGATACCAACAATGTAACTGACATTAATAGATTGACTGATTGTGTGGTCATATTATATGATATTTTCAAAAAGCCTGAAGAAGGTGTACCAATACAAGGTGAATCACTGGCGACAATGAGACCAAGTATTAGTTCTTGGGACAGTCAGCGTCATATTGAAAAGGCCTCTAAAGATTTTAACTGTCAGGCAGTTAGTCGGAATGAAGACACTAGACATACGATAGGAGACATTCAACCAGTTACTAACAAACTGAAAGTTACTGAGCTTAATGTTACGAAAATTTCACAAAGTAAAAGTTATTGTTCAAATAATTACAACAGTGAAGATAGTTTGCTTACTGACAAGAATGGGTATATTTGTGATGTATGTAGACATAAGTTTAAACGGAAAAGTGTCTTAGTTAAACACATAAAGACTCACAATGAAGTAAAACCGTTCACTTTCGAGTTTTGCCAATTCAAAGCCATACATAAATTTAGTTTAAAGAAACATATGCAAACTCACACGGGCGACAAACCATTTACTTGCGAGTTATGCGACTACAAATGTACACAAAATAGTAATCTAGTGCGACACATGAGAACTCACACGGGTGAAAAACCTTTTACTTGCGAGTTTTGCGATTACAAATGTGCACAATCAAGTCATTTAGTGAGACACATGAGAACTCACACGGGTGAAAAACCTTTTACTTGCGAGTTATGCGACTACAAATGTGCACAAAATAGTTGTTTAGTGCAACACATGACAACTCACACTGGTGACAAACCTTTTACTTGCGAGTTATGCGACTACACATGTGCATATTCTAGTCATTTAGTGCGACACATGAGAACTCACACGGGTGAAAAACCTTTTACTTGCGAGTTATGTGACTACAAATGTGCACAAAATAGTAGTTTAGTGCAACACATGAGAACTCACACGGGTGAAAAACCTTACGTTTGTAAGTTATGTGATCATAAATTTGCACTATCAAGTCATTTAGTGAGACACATGAGTACTCACACGGGTGAAAAACCTTTTACTTGCGAGTTATGTGACTACAAATGTGCACAAAATAGTCATTTAGTGCAACACATGAGAACTCACACGGGTGAAAAACCTTACGTTTGTAAGTTCTGTGATTATAAATTTGCAGGAACTAGTCATTTAGTGAGACACATGAGAACTCACACTGGTGAAAAACCTTACATTTGTAAGTTTTGTGATCATAAATTTGCACGAACTAGTCAGTTAGTGAGCCACATGAGAACTCACACGGGTGAAAAACCTTATGTTTGTAAGTTATGTGATTATAAATTTGCACAAACTAGTCATTTAGTGAGACACATGAGTACTCACACGGGTGAAAAACCTTTTACTTGCGAGTTATGCGACTACAAATGTGCACAAAATAGTAGTTTAGTGCGACACATGAGAACTCACACGGGTGAAAAACCTTTTGCTTGCGAGCTATGCGATTACAAATGTGCACATCTCAGCCTTAGACCTGTTATGGTGGGCTGGCGATGGGTTGAGGATGATGATTTGTCCAGTAGATCTCAGGTGGAGGTGGACGTGCGTCGTGGATTGAGTGTGCGGATGAGTGACACTGTCACTGCTTTGCACTTCGTGCTGCACATCTCCCGCCTAACAGTGTTGGTTCGATAA
Protein Sequence
MRCCVPFCTNTPTNVSTSESKGISFHALPSDVCLRAAWLRALGKQHSQLPNSAVVCSQHFLDDEIYETESGLRQIATGAVPSTVQVCMICLDTDSKLYPMSKHKLEEAYERLTGYPLYDQGNLKRTLCVKCAQRLINFSRFRDNSLRARALMMDLVEKHELITRRHIKGINRTKNQLKSNFVVKTLGPDHCDLYILDSSDKQTESEPIKRENEESYDSPVDEDMEVAEEDDDTADNVNDEFVACNEECFSDDSIMLETKLLDDVICKALENPVFAEQVAEIPDLLKCESAAFQCTLCSEEFVSEHAYMQHMRMHDQQNSDGNADCSTSQVCKPHTAVSSSHSPHFTENKQAIPLSQASSLSVHSPSAHSPQTAVAPLSARLATSNGNKVQAEDADTVQKSKPLFKINNVELNNQLFDTNNVTDINRLTDCVVILYDIFKKPEEGVPIQGESLATMRPSISSWDSQRHIEKASKDFNCQAVSRNEDTRHTIGDIQPVTNKLKVTELNVTKISQSKSYCSNNYNSEDSLLTDKNGYICDVCRHKFKRKSVLVKHIKTHNEVKPFTFEFCQFKAIHKFSLKKHMQTHTGDKPFTCELCDYKCTQNSNLVRHMRTHTGEKPFTCEFCDYKCAQSSHLVRHMRTHTGEKPFTCELCDYKCAQNSCLVQHMTTHTGDKPFTCELCDYTCAYSSHLVRHMRTHTGEKPFTCELCDYKCAQNSSLVQHMRTHTGEKPYVCKLCDHKFALSSHLVRHMSTHTGEKPFTCELCDYKCAQNSHLVQHMRTHTGEKPYVCKFCDYKFAGTSHLVRHMRTHTGEKPYICKFCDHKFARTSQLVSHMRTHTGEKPYVCKLCDYKFAQTSHLVRHMSTHTGEKPFTCELCDYKCAQNSSLVRHMRTHTGEKPFACELCDYKCAHLSLRPVMVGWRWVEDDDLSSRSQVEVDVRRGLSVRMSDTVTALHFVLHISRLTVLVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00954598; iTF_00954613; iTF_00954817;
90% Identity
iTF_00954598; iTF_00954613; iTF_00954817;
80% Identity
iTF_00954598;