Mjur021131.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995212.1:13887750-13900205[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7 1.1e+04 -3.5 0.0 43 58 125 140 125 152 0.75 2 2 3.5e-16 1.4e-12 47.4 0.0 7 70 374 437 370 442 0.91
Sequence Information
- Coding Sequence
- ATGTCAGACGAAATGGCGGTTGGTGATAAGGGACCAAGTGAAGAAAATAAAGTTGGTGGTGAAGATGCGGAGATGGAGACGACGGACTCCGTGGCGTCCTCGGAGCCCCCCATAGAAACTACAGGGGCCGAGCCTCAGCAATCTGCACCTGTGGAAGTACCACTGCCACCCGATGCAGAGGACGATCCTCCAGAAACCATTGCGGCTATCAGAGAAGAACTAGGTATCAAAGATGACAATTTACCCAAAAGTGACAATGTAGTAAAAACTGACACTGACACAAAACATAAAATTGAAATGGTACATGAAATTACAGTGGAACACAAAAGTGACGAGGAAGTACAAGATAATGACATATACACAGATGATGTGTTTAAACAAGACAATGACGTCAAAGCTATACTTGAGGATGAAGGGCAGAGTATAGTCCGTGTGGAAAACACTAAAATTGATGAGGACAAGATTTTGGCTAGTGAGGGAAAAGTTACAAAAGAGGTAGATGTTCAGCTAGAAAAAGATGACCAAGATGACATTACCCCTACTATAGAAGCTTCTAGAGGCATGAAGCGTAGAGCATCTGCTGCATTCAGTGACGATGGCATGGAAGAGTTTAAGGGCTTTGATAATTGCGAGCCAAGCAGCCTGGCCGACTATAGTCGCATTGTTGAGGAGAGAAGGGTAAAGCGCAGGCCCTCTGAGTCCAGCGAGTCTGGCGAGGACGGGTTCAAAGGTTTCGACCTGATCCAACACAGCAACTTGACTGGTTACTATCAAGTCTTAGAACGTCTAGAAGCAGAGGTGTCGGCAGCTGTGAAGACCTACAAACCGTTGAAGACGGTAATGGCCGCGCCTACGCCTCGGGCCAGCAAACGCGCGCGCCAGGACATGGGGCGGGCCAAGTGGTCGGGTCCTCTCGAGGAGGAGGTCTCAGCCTTTGTGAAGAGCTTCCTCGACGACGGCGTCAAAGCGGGCAAGAGACAGCGCCAAGGCACTGATAGTTCGAGACCATCATCAGCTCTATCGTCGAGATCGGACGACGCGGCGATGAACCCTGATGGGTCGTCGGCGGGGCGCACGGCGCGGCGCGCGACGGCGGCGCCGGAGATGTCGTCGCCGCTGCTGCGCGTGCCGCTGGAGCGCGGCTGGAAGCGCGAGCTGGTGTACCGCGCCGCGCAGGCCTCGACCGACCCGCCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGGAAGAAGCTGCGCTCCACCAGGGAAGTCTCGGAACACTTGTCGGGCACTGGCTTAACAATAGAGAACTTCTCATTCTTCAAAGAACCACTAGGACTTGATGATCCCGACAAGGAAATTATACGGGACGCGAAAATTAATCGCCGTGTGGAGTCGCCGGTGCCGGCCGCGACGCCGCCCGCAGTGGAAGGCAAGAGGACACCGAAGCCCAAACCGCCCAAGGGAGCCAGCCCTGAACCCACCACTCCCAAGTCTCCGCCTGCTAAGATTAAAGTAAAATCTATGGGTTCCCGGCTAAGCTCCAACGGAACAACGCCAAAGACTACGAAAAAGCCGCAGCCGCAAACGCAGCAAGCGCAGCCGCAACCCGCGACGACGCCTGCGGATAACAATAACACAGCCGCGTGGAAGAAACCCAGGGGCCCGCCGCCGTTGCAGCCGCGCCCCGCGCCGCCGCCCGCGCCGCAACCCGCAACCACCCGGGACCACCACCAGGTGACTAACACTACTATACTGCTAAATCGTCAGGTGCAGCAGCCGTGCTCGCTGACGTGCGGGCGCGGCGTGCCCACGCTGGCGTGCGCCGCGTGCCTGTGCCTCTACCACCCGCCGTGCGTCGGCTTCGTGTGCATCCCGCCACCGGATAGATTCATGTGCAAGGTATGGACAGTAGGGTAA
- Protein Sequence
- MSDEMAVGDKGPSEENKVGGEDAEMETTDSVASSEPPIETTGAEPQQSAPVEVPLPPDAEDDPPETIAAIREELGIKDDNLPKSDNVVKTDTDTKHKIEMVHEITVEHKSDEEVQDNDIYTDDVFKQDNDVKAILEDEGQSIVRVENTKIDEDKILASEGKVTKEVDVQLEKDDQDDITPTIEASRGMKRRASAAFSDDGMEEFKGFDNCEPSSLADYSRIVEERRVKRRPSESSESGEDGFKGFDLIQHSNLTGYYQVLERLEAEVSAAVKTYKPLKTVMAAPTPRASKRARQDMGRAKWSGPLEEEVSAFVKSFLDDGVKAGKRQRQGTDSSRPSSALSSRSDDAAMNPDGSSAGRTARRATAAPEMSSPLLRVPLERGWKRELVYRAAQASTDPPRRNADIYYYTPQGKKLRSTREVSEHLSGTGLTIENFSFFKEPLGLDDPDKEIIRDAKINRRVESPVPAATPPAVEGKRTPKPKPPKGASPEPTTPKSPPAKIKVKSMGSRLSSNGTTPKTTKKPQPQTQQAQPQPATTPADNNNTAAWKKPRGPPPLQPRPAPPPAPQPATTRDHHQVTNTTILLNRQVQQPCSLTCGRGVPTLACAACLCLYHPPCVGFVCIPPPDRFMCKVWTVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00953531;
- 90% Identity
- -
- 80% Identity
- -