Mhyp007791.1
Basic Information
- Insect
- Maniola hyperantus
- Gene Symbol
- ZIPIC
- Assembly
- GCA_902806685.1
- Location
- NC:297546-298991[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.3 3.8e+03 -2.4 0.1 19 30 146 157 126 170 0.57 2 6 4e-06 0.05 13.2 0.1 17 48 171 203 157 206 0.83 3 6 0.00059 7.5 6.3 0.1 21 44 235 258 229 264 0.90 4 6 0.0001 1.3 8.7 0.6 20 46 290 316 269 319 0.73 5 6 1.5e-05 0.19 11.4 0.4 6 48 359 401 356 404 0.93 6 6 0.57 7.2e+03 -3.3 0.3 26 31 442 447 432 458 0.58
Sequence Information
- Coding Sequence
- atggaTCAAAATATATGCCGTTTATGTAACGTAAACATTGGTGTTATTTATCTATTTGACTCTTTAGACGGTGAAACACAATTGAGCGCGAAAGTGAATCACTGTGCTAAGGTAGAAATCGTCCAGGGCGACGGTCTACCTGCTAACATTTGTGTTTGCTGTGAGGAAAACCTCGCATCTACGTACCGCTTCGTCCGGAAATGTGAAGAAACGGACCAAAAGCTCAGGTCTCTGCAGTTCACTGTCAAACAGGAGTGGGAAACCAAATGCGATGTAAAGGTGGAGACAGCCTGTGATAATGAGGATGATAGTTTCCCACCAGACAATATTTTTGAGGATCCCAGCGACTCTCCACTCGATAACGTCAAGGTGGAAGATAAACATCCGGTGAGGACAAAACGGAAGTATGTAAGAAGAAGTACTGTTAAAAGAGAGTCAACAAAGGGTGACCCCATCAAGTGCAAGGTTTGTGGACGCAAGTGCGCTAATCCATCGACACTAGCGATCCACATGAGGTCACACACCAACGAAAAGCCTTTCACTTGCCCCACGTgtgacaaaaggtacaaagatgGTGGTGGTTTGAAACGGCACATCGAGAGAAACCACAACGATGACAGGCAAAAGGCTTTCATCTGTGAACACTGCGGGAAAGGTTTCTACTCCAAATCCGACTGTAAGATTCACATGCGAGTACACACTGGGGAGACACCTTACGCCTGCACCAGCTGCCCCGCACGGTTCACCCAGGTGGGCTCCTTGCGCAGGCACGTCCTGACTCACACCGGTGAAAGATCACATATGTGCTCAAAGTGTTCCAAAAAGTTCCCCACTACCCAGCAACTAAGGAAGCATTATTTGGTCCACTCCAATGAGAAGAAGCACAAGTGTCCCATTTGTGAGTTGCCCTTCAAGTACAGCAACAGCATGCGAAAGCATATGCGACTACACCTGGATGGAATGATTAAAAAGTTCATGTGTGACGATTGCGGCCAGAGCTTCATGGTGAAAGGGGGTCTCCAGTCGCACATAAAGAGACTGCATTCAGCAAAATCTGGATACTGCAGCGAGTGTTCCAAGCATTTTCCAAACTTGGAAATGCACATGTGGAGGCATGTGGGTGTGCGCCCCCTCAAGTGTGAGCTATGCCCCAGCAGTTTCTTCGACTCGAGGGGTCTATCCAGACACGTTAGCTACCGCCACAAGTGTGTAGACAAGTTCCAGTGCACGACGGACGATTGCCCGGCTAAGTTCCCCGCTCGAGCCATGCTGGACTATCACGTGATGAGATATCATAAATCAGTTAAACCATTTTGTTGTGACAAGTGTCCCagatgtttttatagaaaaagtgATATGGTGAGACATAAAAGAGGCACCCACAAATAA
- Protein Sequence
- MDQNICRLCNVNIGVIYLFDSLDGETQLSAKVNHCAKVEIVQGDGLPANICVCCEENLASTYRFVRKCEETDQKLRSLQFTVKQEWETKCDVKVETACDNEDDSFPPDNIFEDPSDSPLDNVKVEDKHPVRTKRKYVRRSTVKRESTKGDPIKCKVCGRKCANPSTLAIHMRSHTNEKPFTCPTCDKRYKDGGGLKRHIERNHNDDRQKAFICEHCGKGFYSKSDCKIHMRVHTGETPYACTSCPARFTQVGSLRRHVLTHTGERSHMCSKCSKKFPTTQQLRKHYLVHSNEKKHKCPICELPFKYSNSMRKHMRLHLDGMIKKFMCDDCGQSFMVKGGLQSHIKRLHSAKSGYCSECSKHFPNLEMHMWRHVGVRPLKCELCPSSFFDSRGLSRHVSYRHKCVDKFQCTTDDCPAKFPARAMLDYHVMRYHKSVKPFCCDKCPRCFYRKSDMVRHKRGTHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954885; iTF_00953767;
- 90% Identity
- iTF_00953767;
- 80% Identity
- iTF_00953767;