Mhyp011012.1
Basic Information
- Insect
- Maniola hyperantus
- Gene Symbol
- -
- Assembly
- GCA_902806685.1
- Location
- NC:7759759-7772714[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00012 0.0046 16.9 0.4 1 23 254 276 254 276 0.98 2 13 0.0068 0.26 11.4 3.9 1 23 284 307 284 307 0.93 3 13 5.5 2.1e+02 2.2 0.6 1 23 311 334 311 334 0.88 4 13 0.00032 0.012 15.5 2.6 1 23 401 423 401 423 0.99 5 13 0.22 8.4 6.6 2.3 2 23 432 454 431 454 0.95 6 13 4.3 1.7e+02 2.5 1.7 1 23 458 480 458 480 0.95 7 13 5.3e-05 0.0021 18.0 1.8 1 23 485 508 485 508 0.97 8 13 0.11 4.4 7.5 2.5 1 23 512 535 512 535 0.91 9 13 1.6 62 3.9 0.1 2 19 554 571 553 574 0.91 10 13 3.4 1.3e+02 2.9 0.1 3 23 617 638 615 638 0.85 11 13 1.6e-06 6.1e-05 22.8 1.3 1 23 647 669 647 669 0.98 12 13 0.00036 0.014 15.4 0.7 1 23 675 697 675 697 0.96 13 13 4.7e-06 0.00018 21.3 2.6 1 23 703 726 703 726 0.98
Sequence Information
- Coding Sequence
- ATGTTTGACCTCAAAGTGTGCACGGTGTGCTTACAAATGGATGTGAGATGTTACAACCTGAACGAGAATAGTGGTCAGTTGAGGAAGGATTACAATGTGATTGCAGGATTAGAGACCCGGTGTGGAAATGGTTTACCTGAATACTTGTGCTACCAGTGTGCTGCTCAAGTACAAAAATGCAAAAGCTTTCATGAAAGGTGTCAAAGGGCATATTTTGTCCTACAAGAGGTATTACAAAAGAATAAAGAGATAACAAAATCCATAATCGAAGAAATAGATGTTAACATGTTAAACATAGGTCCAACTCTCTCATTCCTCAATAAAGACAGTGTTAAGTCAAAGTTTGACAAAGTAAAGTTTAAATGGATCAAAACAATTCGCATGAGCATAGATCCTCAGGAAAAGATACCTGTGATACAATACGGACCTCAGTACGACGAGTCCTTTGAACAGGTGACACAGGCAGTAACCGAAGCTAGTATTAAAAACGAGAATGTCTGTCAAGATTTAAACAACGAGGATTACAATGCAGAATTAGATGCGACagaaaatgataattttttcaatGAAGATTTTCAATGTGAGAATGAGAAAGATTTTGATgttgatattgatattgatacTAATGAAATTGAGCCTAAAATTGATCGGGATGCCGACGGGTCTCAGTTGAATGAGGAGTATGCGATCATGGTTCCTATTAGTCTGAACGAAGCGAGTGCGGTGGTTGAGATTAGTAAATTGGATGCGAAAGGCAAATATCCGTGCGATGTGTGTGAGAGGATGTACTCTAATGCAACCCGGCTCAAAGTTCATAAGAGGATGCATGAAAAGCATATAAGTGGAACGCACCGGTGTGTCATATGCAACTACTACTATAAGACTcagttcctactgaaaacccaTATGACTGATAAACATATGTACAAGTATCTTTGCAGAAAGTGTCCGCAGGTCTCGTTTGACAGACCTACCGCAAAAAGGCATTTCATGTGGACCCACATACAAAAGAAGAAATCCGACACTGAACTTAAATGCAGACCAAAATGGTTACGGACTAGaggaaaaagaaataaaacgtTCCCGAAGAAACCAACCAAAATACCGAAAGATTTCCTCACTTACACACCAATAAGTCAAGAAGAGCAATACCGGTTGGTGAGTGAGAGACAAAACAGTAGAAATTACGTAGAGTCTCTATACAGGTGTGAATATTGCTTTAAAGGGTTTAGAGAAGATGGTACATACACCAAGCACATGCAAAAACATGATCCTGCTATTTCGGGCAGCCTGCAGTGTGACATGTGTAAAATATACTGCGTCAACGCTCGCAAGATGTACAAACACATGAACTTGACACACCTGTTCAAGTACACGTGCGTGCCGTGCAACTTTGTGTGCTACAACAAGGGTCAAGCGAGTAACCATTATAAATGGCACCAGAATGTCACATACCCGTGTCCGCACTGCGATAAAGTATTCTATAAGCTATCGACGCGCCTGACGCACATCCGCATAAAGCACCCGTCGATGTACATCTGCAACCTGTGCGGACACAGCTTCGTCAGCGAAAACGGACTCTACTGCCACAAGAAGATGGCGCACAGCCAACAGGAAGTAGAAGACGATACCGGCGCAGTGGACACAAGTGACCCGCTGTACTGCTCGGAGTGCAGGATTCAGTTCCGCGACGACGCTGCCTTCGCCACGCACTTCGGGTCTTCCAACAAACATGCCGATACCAACCTGTCTATAAAGCCGGTGCGCACCAGGATCCGCAAGTCCCGCGGCAGACCGCGCCGCGACAACACCGACATCGTCAACAACGGCTTGCCCACCGCCACCAACTGCGAGATTTGTCAGAAGTTCCTGGCGTCGGACGTGGCCGCGACGCGCCACTACGAGGCGGAGCACCCCGGCGCGGACTATCTCAAGCGGTACATGTGCGATATCTGCGGACACACCACTAAGCAATACGCCAACCTAATGGTGCACATGCGCACGCACACGCGCGAGAAGCCGTACGCGTGCCCGCACTGCGAGCGGCGCTTCAGCATGCCGAGCAACAGGGACAGACATCTGGTGGTCCACACCGGCGAAAAGCGCTACCAATGCCAACACTGCAACCGCCGCTTCACTCAGAGCAGTGCCGTCAAGCTGCACATACAAACCGTCCACCTCAAGATCCCATACGCGCCCTGGGACAAGAAGAACCGTAAGCGACGCCGCGACAACGAAGTGCCGCCCTCGCCGCCCCCCGCGCGTCCCAACACCACGACTCGCAGGATTGTGATAGACGCGGACAATTACTTGAGTGCTTACATCACTTACAATGAGTGA
- Protein Sequence
- MFDLKVCTVCLQMDVRCYNLNENSGQLRKDYNVIAGLETRCGNGLPEYLCYQCAAQVQKCKSFHERCQRAYFVLQEVLQKNKEITKSIIEEIDVNMLNIGPTLSFLNKDSVKSKFDKVKFKWIKTIRMSIDPQEKIPVIQYGPQYDESFEQVTQAVTEASIKNENVCQDLNNEDYNAELDATENDNFFNEDFQCENEKDFDVDIDIDTNEIEPKIDRDADGSQLNEEYAIMVPISLNEASAVVEISKLDAKGKYPCDVCERMYSNATRLKVHKRMHEKHISGTHRCVICNYYYKTQFLLKTHMTDKHMYKYLCRKCPQVSFDRPTAKRHFMWTHIQKKKSDTELKCRPKWLRTRGKRNKTFPKKPTKIPKDFLTYTPISQEEQYRLVSERQNSRNYVESLYRCEYCFKGFREDGTYTKHMQKHDPAISGSLQCDMCKIYCVNARKMYKHMNLTHLFKYTCVPCNFVCYNKGQASNHYKWHQNVTYPCPHCDKVFYKLSTRLTHIRIKHPSMYICNLCGHSFVSENGLYCHKKMAHSQQEVEDDTGAVDTSDPLYCSECRIQFRDDAAFATHFGSSNKHADTNLSIKPVRTRIRKSRGRPRRDNTDIVNNGLPTATNCEICQKFLASDVAATRHYEAEHPGADYLKRYMCDICGHTTKQYANLMVHMRTHTREKPYACPHCERRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRRDNEVPPSPPPARPNTTTRRIVIDADNYLSAYITYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954977;
- 90% Identity
- -
- 80% Identity
- -