Mhyp010716.1
Basic Information
- Insect
- Maniola hyperantus
- Gene Symbol
- ZNF296
- Assembly
- GCA_902806685.1
- Location
- NC:8369216-8379371[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0058 0.22 11.6 1.2 1 23 243 265 243 265 0.98 2 11 0.0025 0.095 12.7 2.6 1 23 272 294 272 294 0.98 3 11 0.018 0.7 10.0 1.2 1 23 298 321 298 321 0.97 4 11 1.8e-05 0.00071 19.4 1.3 1 20 328 347 328 349 0.95 5 11 0.00032 0.012 15.5 1.0 2 23 358 380 357 380 0.95 6 11 4.2e-07 1.6e-05 24.6 2.2 1 23 392 414 392 414 0.97 7 11 0.00011 0.0042 17.0 0.1 1 22 420 441 420 445 0.93 8 11 4.7e-06 0.00018 21.3 0.6 2 23 454 476 453 476 0.96 9 11 0.00018 0.0069 16.3 0.6 1 23 482 505 482 505 0.96 10 11 0.00073 0.028 14.4 2.8 1 23 514 536 514 536 0.97 11 11 0.042 1.6 8.9 0.0 1 23 542 565 542 565 0.79
Sequence Information
- Coding Sequence
- ATGGGCACCAAAGACTCTACTTATTATTGTTTAGGATGTTTTTATCATTTGGACGATAAGCTAACGCGGCCGTATAATATCCAGAGCGAGGCTCTGAAAGCTATATTACaggtAGACAGCATAACCttatgttacatttgtaagaagTTAGCACAGAAAAGTGAACTATTTATACAGAGTGTGCGAAGAAATCAGATTTACTTAGAAGACTTTACAAATATTCCAGATTCAACAAGTGATAGTAGACACCATTTTCAACCGTTGATCAATCTATCAAGTGTATCTCTAGACAGAATTGAGTTGACCAATGACAATGAAGACCTAGAGAGGCCCATCTCTGTGGTATACAGTTCACGCACAGACAATGttgatattattaaactagAGTTAAAACAAGAGTTTGCTTTGGATAATTTGGATGAGGAGTTCTTTGATGGTAATGAGTATCAAGAATCATCCATAAAAGAAGAAGAATGTATGTTAGACGAATTCAAAGAAGACATCAATGAAATCCACGACGACGCCAACTTGAAACAACTTAAAAGAACATTAAAGAAAGCAAAACTCAAAAAcatatcaacaaacaaacaaaagaaaCAGGCAAAACACAAAAATAGAGTTAGTGAAATAaaagGTCAGGCAATAATAACAGTGCGTGTGACAAAGGAGCAAATTATGAGAGAAAGGAGGAAAATGCGTGAAGACCTAAAGTATAAGAATTTATCATATAAGTGCAAGGACTGCATCATTGGGTTTAATTTTAAGGAGACATATGAAAAACATATGGAACAGCATAGTGAGGAAATGGGTCAATACAAATGTGATATATGCAAAAAAAGAATGAACACCTTGGAAAAACTGATTAGACATAAGAAATACCATCAAATACGTTACCAGTGCGGCGAGTGCGGTCTGACCCGTGTCCACAGGAAGTCTATCAAGGAGCATTACACGACTGCACACTTGAGCCATTCGGTGCATTATTCGTGCTCGCACTGCGATAAAGTGTTCAACCGCAAATTGTCGCTGAGTAGGCATTTAGCGTACGCGCAGAGAAGCGTCAGAAGTATCACTTGCAAGTTTTGCAGCAAATCTCTGAGCAGCAAGGAAGGATTGAAGAACCATATCATGCTGAAGCACCCAGCAGAAATGCCGGGGCAAACTTTCAAGCATCACATCTGTCCCGAATGCGATACTGGCTTCAAAACCCCTTCGCAGCTCAAACACCACATGATCAAGCACTCTGATAGAAGGGACTTCTATTGCGTGGAATGcgatagGGGTTTCAAATCGAGCTTCGCACTGACACAGCATCTCAAGATTGCAGCTCCTCACGTCAACTATTTAGAACTAAAACTCCAATGTGACCAGTGCGACAAAAGGTTCGGAGTGAAAAGAGATCTAGAGCGACATATGAACAGAATCCATCTCAACCGAAGGCCCTACCAGTGCGACCAGTGCGACCGGGCATACGTAAACTTATGGTCGCTCACGGATCACAAGCGCTTTACGCACGAGGGAGAAAAACGGCCCCTGAAGCACCCCTGCCCGATGTGTGATAAAGTGTTCGCTCTGAAGTCTACATGCAAGGTGCATATGTACACGCACACAGGCGAAAGGCCCTACGCGTGCCCCGAGTGTGACGCAACCTTCAACCAGCCCGGCATCCGCGCCACGCACGTACGACTAGTCCACATGCGCCTCGCGAGGGACGGCCGGCCTAAGAAACATACTGGCTAG
- Protein Sequence
- MGTKDSTYYCLGCFYHLDDKLTRPYNIQSEALKAILQVDSITLCYICKKLAQKSELFIQSVRRNQIYLEDFTNIPDSTSDSRHHFQPLINLSSVSLDRIELTNDNEDLERPISVVYSSRTDNVDIIKLELKQEFALDNLDEEFFDGNEYQESSIKEEECMLDEFKEDINEIHDDANLKQLKRTLKKAKLKNISTNKQKKQAKHKNRVSEIKGQAIITVRVTKEQIMRERRKMREDLKYKNLSYKCKDCIIGFNFKETYEKHMEQHSEEMGQYKCDICKKRMNTLEKLIRHKKYHQIRYQCGECGLTRVHRKSIKEHYTTAHLSHSVHYSCSHCDKVFNRKLSLSRHLAYAQRSVRSITCKFCSKSLSSKEGLKNHIMLKHPAEMPGQTFKHHICPECDTGFKTPSQLKHHMIKHSDRRDFYCVECDRGFKSSFALTQHLKIAAPHVNYLELKLQCDQCDKRFGVKRDLERHMNRIHLNRRPYQCDQCDRAYVNLWSLTDHKRFTHEGEKRPLKHPCPMCDKVFALKSTCKVHMYTHTGERPYACPECDATFNQPGIRATHVRLVHMRLARDGRPKKHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954882;
- 90% Identity
- -
- 80% Identity
- -