Mhyp011078.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Maniola hyperantus
Gene Symbol
-
Assembly
GCA_902806685.1
Location
NC:888287-917821[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.01 0.4 10.8 0.7 1 23 509 531 509 531 0.98
2 11 0.00085 0.033 14.2 1.4 1 23 548 570 548 570 0.98
3 11 0.0017 0.065 13.3 5.3 1 23 576 598 576 598 0.99
4 11 0.00011 0.0042 17.0 3.1 1 23 605 627 605 627 0.99
5 11 1.1e-05 0.00041 20.2 0.1 1 23 633 655 633 655 0.93
6 11 2.1e-06 8.1e-05 22.4 0.0 1 23 661 683 661 683 0.98
7 11 2.1e-06 8.1e-05 22.4 2.1 1 23 689 712 689 712 0.96
8 11 0.00087 0.033 14.2 3.7 1 23 718 741 718 741 0.95
9 11 0.00032 0.012 15.5 1.0 3 23 749 769 747 769 0.96
10 11 1.9e-05 0.00072 19.4 1.1 1 23 775 797 775 797 0.97
11 11 0.0025 0.095 12.7 0.4 1 23 803 827 803 827 0.94

Sequence Information

Coding Sequence
ATGATATCGTatgtcaacaagttttggaTGATATGTTTTGTCTGCAACAAAATTACTGTAAGAAATGCTGTGAGCTTATTTGCTTCggaaCTACCTCTTAAATGTGATAAGACCTTACTTGCCACTGTTAGTGAGATAATTGAGAAAAAAATCAACAAGGAATCTGTTCACTCTGAGATATTGtgtaaaaaatgtcaaaaaaatgttttggagTATGATTCACTGCAATACAGaTTGAAAGTAATTAAAACAGAAATTTTGGACACTTTCAAAAATTCGTTACCCGAACACAATTTAAACTATGAGACATACAATGAGGATAGttcaaataataacaaaaacaatagtGCAAAGAAGGTGGTGTTGCCAGCTTCAAAATTACAGCCTTTGCCACCCGGCTTTGTATTGTCAGTCGGAAATTCTCCTATGCCTAAACCTGTCAAGATTCTGCCCAAACCGGCTGCGATTATGCCCAACTCAGTTATGACTAAACCGGTCATGATTATGcctaaaataaaaAACGTAATGACtctaccatcatcatcaaccctaaACCTTAAAGTGACAGTTGGTACCTCAGTTCTGACCCAAAGCATCAACACCGTGACGAGCAAAACCAAATTGACACCTTTGACTGTAGATTCAAAATTAATTGCGGTGTCAAAAGAAAAGATAATTAACGACCATAACTCGACTAAATTTGTCAATTCAAATAAAACTAGTTCTATACTAAGCTTCAATGTAAATTCGCTGCCAAAAGATTTTCTCTCATCGGCCATTTTGAAAGTAGatgccgattttgatgaaactacGACTGAGAAAGAGAATGACGATTTGGAAAACCACGAGGATTCGATGGAAATTGATGAAGATTGTTCGATGACGGCCTTAACCAAAGATTCACACGACGAGCTACAATTTGAAGAAGATAATGTGATAATGGTGGATGATGAAGAAGATAAGTCTGAAACAGAATACCTAGACATGAAACTGTTGGAaggtacagacagacagtatgTGTTGGGGAAAATAATATTAGAAGAGGATGGAGACAATGACGGTGATGCAGAGGAACATACAATACTAATGGACAGTGAGAACGGGTCAATAATCCGAGTGATGTCGGGGCAGAAGGTTGTATGTAGTGAAGACGGGCAGATATCGTTAGTGACTGAAGAAGACGCCGACGCGAGCCATGatTCTAACGACGAGTCCCAAATAGAGTTACAAGTGTCGGGAGACGAAGAAACAGCCAACGCTATAATCGCGGCGGCGCAAGAGCAGGGTGGTGCGTTCATTAAAGTGGAATCAGGTGAGATGTTCAGAGTGCAGTCAGTAGAAAGCAAAACCGAAGAAGACGACAGTTTGAAACTAGAGACACAGTCGGCGATGATTAGTAATGAAGATGGCCAATTTCGATGTCTAATGTGCGAGAGAAATAATGAGAATAAAGggGAGGCGATATTCGTGGGCGATTCGGAGGCCACTATGGAGCACTTGAGAACCTTTCACTCGGCGAGGTTATACATCTGTCGAGTTTGTGGACACGTGGAGAGAAGGAAAAGCGACTATGCCGCACATTTGAAGAGCCACGACGGCAAAGCCAGCAAACCAGTGCAAACTGCGGTCAAAGCGAGAATGCACGAATGTCAAATTTGCAATAAGAAATTCCTATCCCGCGCCCTGCTGACGGGCCACATGAACATGCACAGCGGCTCGCGCCCCTATACCTGCAACATATGCAGGAAGACCTTCGCCTCCAAGTACACCCACCAGTCTCATCTCAAAACACATCTCGACCGACCCCGGCCGTACAAATGTAAGCAGTGCGAGAAGTCCTTCTTCACGGTACAAAACCTGAGTCAGCACGAGAAAACCCACTCTAATGTCAAGGATTTTGTTTGTAATGTCTGTGGTAAAGCGTTCGGAACTCAACACAATTTAGAAGTCCACGGCGTAGTACACTCAGGGAgcaaacccttcgtgtgcggaATTTGCGGAAAAGGGTTCGCGAGGCGTGCGGAAGTGCGGGACCATATGCGGATACACACAGGTGAACGCCCATTTAAATGCGATATCTGTGGAGCGAGCTTCACGCAGAGATCGAACCTGCACTCCCACAAACGAGCAACGCATTTAGACGACAAGCGGTACCACTGCACTCAGTGCCCCAAGAAATTTAAGAGGAGACGGTTGCTGGACTACCACATAAAGGCGTCTCACACTGGCGAACGGCCGCTGGCGTGCGAGGTCTGCCACGCCACGTTCGTGTACCCCGAGCATTACAAGAAGCACGCCCGCATACACAGCGGGGAGAAACCCTACAAATGCGAGGTGTGCGGAAAGGCGTTCAACTCGCGCGACAACCGCAACACGCACCGCTACGTCCACAGCGCCCGCAAGCCGTACGAGTGCGTCGTTTGCGGAGCCGGATATATGCGGAAACAGCTGCTCTACCATCACATGAACACTAGCgGTCACTTAGCGGAATCGATCGTAGTGAATCATCCGAGGGTCACTGAAGTGGGTGAAaaagttTTGGTCGTTGAGAGTAAGACAAACAAATTACCTatatttGCGACTTCCGAAGAGTCTGAAGCGTTAGGATCTGATGAGAAAAACGAAAAAACAACTATAAGTTTAGTGCAAGCGAGTGAAGATTCTACACTATTGACTTTacATAATGTGGAGGGTGATATGGACCCCCTAGGCGAAAACTCCCTCGAGGACCAACAGtcAAGCCCCCAGTTCCGGTTAGTGCCAATCACCCTCCCCGACGGCAGTAGTGGGTGGGTGGCCATCAACACTTAG
Protein Sequence
MISYVNKFWMICFVCNKITVRNAVSLFASELPLKCDKTLLATVSEIIEKKINKESVHSEILCKKCQKNVLEYDSLQYRLKVIKTEILDTFKNSLPEHNLNYETYNEDSSNNNKNNSAKKVVLPASKLQPLPPGFVLSVGNSPMPKPVKILPKPAAIMPNSVMTKPVMIMPKIKNVMTLPSSSTLNLKVTVGTSVLTQSINTVTSKTKLTPLTVDSKLIAVSKEKIINDHNSTKFVNSNKTSSILSFNVNSLPKDFLSSAILKVDADFDETTTEKENDDLENHEDSMEIDEDCSMTALTKDSHDELQFEEDNVIMVDDEEDKSETEYLDMKLLEGTDRQYVLGKIILEEDGDNDGDAEEHTILMDSENGSIIRVMSGQKVVCSEDGQISLVTEEDADASHDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVQSVESKTEEDDSLKLETQSAMISNEDGQFRCLMCERNNENKGEAIFVGDSEATMEHLRTFHSARLYICRVCGHVERRKSDYAAHLKSHDGKASKPVQTAVKARMHECQICNKKFLSRALLTGHMNMHSGSRPYTCNICRKTFASKYTHQSHLKTHLDRPRPYKCKQCEKSFFTVQNLSQHEKTHSNVKDFVCNVCGKAFGTQHNLEVHGVVHSGSKPFVCGICGKGFARRAEVRDHMRIHTGERPFKCDICGASFTQRSNLHSHKRATHLDDKRYHCTQCPKKFKRRRLLDYHIKASHTGERPLACEVCHATFVYPEHYKKHARIHSGEKPYKCEVCGKAFNSRDNRNTHRYVHSARKPYECVVCGAGYMRKQLLYHHMNTSGHLAESIVVNHPRVTEVGEKVLVVESKTNKLPIFATSEESEALGSDEKNEKTTISLVQASEDSTLLTLHNVEGDMDPLGENSLEDQQSSPQFRLVPITLPDGSSGWVAINT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00954860;
90% Identity
-
80% Identity
-