Basic Information

Insect: Maniola hyperantus
Gene Symbol: -
Assembly: GCA_902806685.1
Location: NC:2559202-2568348[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.2e-05 0.00086 19.2 3.0 1 23 136 158 136 158 0.96

2 14 5.1e-07 2e-05 24.3 2.8 2 23 164 185 163 185 0.97

3 14 0.00044 0.017 15.1 2.4 1 23 219 241 219 242 0.95

4 14 0.00075 0.029 14.4 1.4 1 23 253 275 253 275 0.97

5 14 1.9e-05 0.00073 19.4 1.0 1 23 296 318 296 318 0.99

6 14 6.7e-05 0.0026 17.7 0.7 1 23 330 352 330 352 0.97

7 14 1.2e-05 0.00045 20.1 2.2 1 23 358 380 358 380 0.98

8 14 1.3e-05 0.00051 19.9 3.7 1 23 386 408 386 408 0.99

9 14 2.1e-07 7.9e-06 25.6 1.7 1 23 414 436 414 436 0.95

10 14 5.1e-06 0.0002 21.2 3.5 1 23 442 464 442 464 0.98

11 14 2.7e-05 0.001 18.9 1.8 1 23 470 492 470 492 0.98

12 14 1.8e-06 6.8e-05 22.6 4.5 1 23 498 520 498 520 0.97

13 14 3.3e-07 1.3e-05 24.9 2.1 1 23 526 548 526 548 0.99

14 14 0.0064 0.25 11.4 1.6 1 20 554 573 554 576 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.2e-05	0.00086	19.2	3.0	1	23	136	158	136	158	0.96
2	14	5.1e-07	2e-05	24.3	2.8	2	23	164	185	163	185	0.97
3	14	0.00044	0.017	15.1	2.4	1	23	219	241	219	242	0.95
4	14	0.00075	0.029	14.4	1.4	1	23	253	275	253	275	0.97
5	14	1.9e-05	0.00073	19.4	1.0	1	23	296	318	296	318	0.99
6	14	6.7e-05	0.0026	17.7	0.7	1	23	330	352	330	352	0.97
7	14	1.2e-05	0.00045	20.1	2.2	1	23	358	380	358	380	0.98
8	14	1.3e-05	0.00051	19.9	3.7	1	23	386	408	386	408	0.99
9	14	2.1e-07	7.9e-06	25.6	1.7	1	23	414	436	414	436	0.95
10	14	5.1e-06	0.0002	21.2	3.5	1	23	442	464	442	464	0.98
11	14	2.7e-05	0.001	18.9	1.8	1	23	470	492	470	492	0.98
12	14	1.8e-06	6.8e-05	22.6	4.5	1	23	498	520	498	520	0.97
13	14	3.3e-07	1.3e-05	24.9	2.1	1	23	526	548	526	548	0.99
14	14	0.0064	0.25	11.4	1.6	1	20	554	573	554	576	0.94

Sequence Information

Coding Sequence: ATGATTGACTTTAAAAGAACATGCCGGACATGTATGAAAACAAAAAGTGAAGCGGctctaataaatttatttggtCCGGTGAAAATCGAGGCTAATTGGTCATTAAAACTAGCAGATTTAGTAAAGGAAACTATTACATTGCagATAACTGAAGGAGATGGTCTACCACAAAATTTGTGTGAGGAATGTGTAAAACATCTCCAAAATATGCACACATTTCGCACCCAAGCACTCAATTCTGAAAATGCGCTAAGAAAATTAGTTTCACAAAATGCCTCAATAAAGAATGAAACAGACTACAGTTTGAAGCATGAAAATGAGTTTGAATATCTCGATCATGCATATGACGATTTTATATTTGACCATCAGTCCCCAAAGGTTGAAGCTAACAACGATGTATCAATGTTTATTTGCAATGTTTGCAACAAAAAGTTCACCACACGTAAGAAGCTTTTGAAACATTTATCAAATCATGAGGCTCCACAGATTACTTGTCCAGTTTGTGATAAAAGATTTCATAGACAGTCCTCTTTACAAAGACATTTAAATAAGCATTGTGTGATTAACAGTACATCTAATCTTGATAATAGTCTATTAGAGAATACTGTAACAGATTTGGGTGTAAAAGTTAAAGTAGAAAATATAAGCGACCAATATAAATGCTCTGAATGCAATCTTACTTTTGAGAACCAGCAATCTCTATTACTACACTCTAAAGAACACCATAGCATTTATATGGATTTAGAAGAACAAGCGTACAGATGCATTGAATGCTCAAAAAGTTATACAACGGAACAGAGATTGATGAAACACATGGAGACTCATTACAGAAACGGAAAAAGTAAATTAGACAATGAGTTCGAAGTAAAAACGGAGAGAGAGCAGTATGAATGCCCAGAATGTCATGTTGTGTTTGAAAAACAAAGGTCTTTAGCGTCACATTTGAAGAAGCACAAAAGTAAAATGACTTCAAACAGTCAGGCTACATATTTCTGTGCGAATTGTGATAAAGGGTTTGCCCTGAAGACACTGCTTAGAAGACATATAAAGTTGCACTCAGAGAACCGTCCATTCAAATGCACTCAATGCTCTCAGAGTTATACTCGTCAAGACCAATTAGTTATGCATATGAGTAAACATGACGGTAAGAAGAGATATGTTTGCAATCTTTGTAATAAAGcatTTACCCAGCTCTGCAGTCTAAAAGACCACAAAAGAACTCACACGGGTGAAACGCCATTCCTCTGCTCCCAGTGTGGGAAGGGCTTCAGTAACAACTCCAACCTGAGGCAACACTTGAAGCGCCACACAGGACTTAAGCCGTTCAGCTGTAACCTATGTCCTAAGAGTTTTTGTACTAAAgGTCAGATGAAATCCCACATGGACACGCACACAGGCGTACACCCGTACAAATGCCACCAGTGTGGGGCAGCCTTCACAAAAACTAACTCCTTGAAGAAACATGCCATGATACATCTTGGAGTCAAGCCATTTGCTTGTGACAACTGCACCATGAGGTTCTCATCAAAAGATCACTTAAAGCGTCACCAACGTACACATACGGGAGAGAAACCGTACCGCTGTCCGCACTGCTCGCGAGCGTTCACGCAGAGCAACGACTTGGTCAAGCATGTTCGCACGCACCTCGGCCAGAACATCTATCAATGTACGGTTTGCCACGCGAAATTCCGCCTTATGAGGGAACTAAAACGACACTACCCTATACACTACATCAACGGGGCTGAACCCACCCCTGCGCAAGAAATCGAATCACCCCTTGTTATACTCAAGGGGTGCTCCGACCAAGATATAGAGGCTAGCAACATTAATAACATAccgtcagacagacagattacAATCACGTTCAACAGTAATGTTCTAGACAAAAACAGTATTGGTGATATTACTATTAATATAGAGCCGGGGAagataactaataattaa
Protein Sequence: MIDFKRTCRTCMKTKSEAALINLFGPVKIEANWSLKLADLVKETITLQITEGDGLPQNLCEECVKHLQNMHTFRTQALNSENALRKLVSQNASIKNETDYSLKHENEFEYLDHAYDDFIFDHQSPKVEANNDVSMFICNVCNKKFTTRKKLLKHLSNHEAPQITCPVCDKRFHRQSSLQRHLNKHCVINSTSNLDNSLLENTVTDLGVKVKVENISDQYKCSECNLTFENQQSLLLHSKEHHSIYMDLEEQAYRCIECSKSYTTEQRLMKHMETHYRNGKSKLDNEFEVKTEREQYECPECHVVFEKQRSLASHLKKHKSKMTSNSQATYFCANCDKGFALKTLLRRHIKLHSENRPFKCTQCSQSYTRQDQLVMHMSKHDGKKRYVCNLCNKAFTQLCSLKDHKRTHTGETPFLCSQCGKGFSNNSNLRQHLKRHTGLKPFSCNLCPKSFCTKGQMKSHMDTHTGVHPYKCHQCGAAFTKTNSLKKHAMIHLGVKPFACDNCTMRFSSKDHLKRHQRTHTGEKPYRCPHCSRAFTQSNDLVKHVRTHLGQNIYQCTVCHAKFRLMRELKRHYPIHYINGAEPTPAQEIESPLVILKGCSDQDIEASNINNIPSDRQITITFNSNVLDKNSIGDITINIEPGKITNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00954807;
90% Identity: iTF_00954807;
80% Identity: -