Mcon023463.1
Basic Information
- Insect
- Mamestra configurata
- Gene Symbol
- -
- Assembly
- GCA_002192655.2
- Location
- NDFZ01004754.1:68434-71141[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0023 0.22 12.6 0.0 2 23 2 24 1 24 0.96 2 15 1.4 1.3e+02 3.9 0.1 3 23 52 73 52 73 0.87 3 15 0.2 19 6.5 1.7 2 23 96 117 95 117 0.94 4 15 5.1e-07 4.9e-05 24.1 1.1 1 23 121 144 121 144 0.94 5 15 0.0088 0.83 10.8 0.1 3 20 150 167 149 169 0.92 6 15 0.45 43 5.4 0.3 2 23 239 261 238 261 0.94 7 15 4.8 4.6e+02 2.2 2.4 3 23 287 308 282 308 0.81 8 15 6.6 6.3e+02 1.8 1.1 3 23 332 352 330 352 0.87 9 15 8.9e-06 0.00084 20.2 0.4 1 23 356 379 356 379 0.96 10 15 0.028 2.6 9.2 0.7 3 21 386 404 385 405 0.93 11 15 5.4 5.2e+02 2.0 6.3 3 23 414 435 412 435 0.89 12 15 0.0056 0.53 11.4 2.4 1 23 442 465 442 465 0.95 13 15 0.0013 0.13 13.4 2.0 1 23 470 492 470 492 0.96 14 15 3.9e-06 0.00037 21.4 0.4 1 20 498 517 498 520 0.94 15 15 1.3e-05 0.0012 19.7 3.1 1 23 526 549 526 549 0.97
Sequence Information
- Coding Sequence
- ATGGTGTGCGTTTACTGCGGCGATGGCTTTCCAGAACCGGAGGCGTATAGACAACACATGAGAACCGACCACTACCAGCCAAACGTCAAACATGCGTTCGCGCACACCATGGGCACAGAGGAATGCCTAAAGGTCGACTGTACAGACCTAGGATGCAAGCTCTGCGCAAAGAAATTCGAATCTCTAGGTGCCATAGCCGAACACCTCGTCTTAGAACACGACAAGCATTTAAACCTAAACGCAGAGGTCGGATTACAGACTTTCAAATTAGGCCCCGAAAGATGGGTTTGCGCCACCTGCTTCCAGAAATTTCCATCACTTAGATGCTTATCTCGACATAACAGCGTTCACTATCATAAGTACACATGCGAAACATGTGGCAAGTCTTATATCAGTCGCGACAATCTAAAGAAGCATATTCTCTTCAGCCATACCGAAGAAAAGATTTGTACTAAGTGCAAGAAGTCCTTTCCTAACCTTGAAGAGCGGCGCGCTCATGTGTTAGCAAGCAAACGATGCTGGCCTTACTGTTGTAACCTTTGCGGCCACAGAAACATCAACACCAAAGACAGAACAGAAGAGCAGTTGAATGACTGGGCATTTCTTTTTGTTCTAGAGAAGCAAAATGACCCCAATTTCATCTCGAAACGGAACGCCGAGATTATTGTGAAATATTCCACCGTTTACCCCTTCAAGCTGCCAGAAGACAATATGGTTTGTGTGTACTGTTGCGAAACCTATCCGGATGCCGATGTGTTCAGAACCCATATGAACGAAGAACATGAAACTTTTAACCCCAAAATGGCCTTTGTCCATTGTTCCGAAGGGTACATCAAAGTTGACTGCACTAATATCAATTGTAGACTCTGTTTTAAACACTACCAGAATTTGGACCAGATAGCAGATCATTTGTACTCCGAACATAAGAAGCCCCTTGACTTAACCGTCGCGTTAGGGCTTCAACCATTCAAGTTAGAGAATAATAAGCTGTTCTGCGCGATATGTCCATATAAAGCTGTATGCTTGCGGCAGTTAAGCAGACACACGCAGAGCCATTTCTGGAGATACACCTGTGAAGCTTGCGGAAAATCGTACGCAACCAACACAGCATTGCGCAGTCACATAAGATTCTCGCACATCGGCACCGAAAAGATATGCCGCAAATGTAAACGGACTTTTTCTTCTATCGAAGAGAGGCGGAAACATTTGCAGGAGTCCCAAAAATGTTGGTCACATTTATGCTGCGTCTGCGGAGAGAGATTCATGTCATGGCACGCCAAACAACTTCATTTAACAGAGTGCCACGGAGTTGAAAAGAAGGTTCACGTGTGTCCAGAATGCGGACAGATCTTTCAAGAACGAAAGAAGTATAGAACGCATTTCAGGCTAACTCACACGGATGATAACTATGTTTGCTCGTGCTGTGGCATGAAATTCGTTACCAAAAAGAATTTAGAAGAACACAGGGTCTCTCATACGATGGAAAAACTCTTTCCTTGTACTGTATGCTCCAAATCGTTTCCTAGAAAGAAGAATTTGATACAGCACATGTGGATACATATGGAACATAAACGATTTGAATGCAAGTTATGCAATAAGAAGTTCAATCAGAAAGTTAGTTGGAAGACACATATGAAATCGTACCATCCTGAGTTAGAGGATTTTGAAggaaaaaatgataatattaaattaatgttttctgtTTTGACCGAATAA
- Protein Sequence
- MVCVYCGDGFPEPEAYRQHMRTDHYQPNVKHAFAHTMGTEECLKVDCTDLGCKLCAKKFESLGAIAEHLVLEHDKHLNLNAEVGLQTFKLGPERWVCATCFQKFPSLRCLSRHNSVHYHKYTCETCGKSYISRDNLKKHILFSHTEEKICTKCKKSFPNLEERRAHVLASKRCWPYCCNLCGHRNINTKDRTEEQLNDWAFLFVLEKQNDPNFISKRNAEIIVKYSTVYPFKLPEDNMVCVYCCETYPDADVFRTHMNEEHETFNPKMAFVHCSEGYIKVDCTNINCRLCFKHYQNLDQIADHLYSEHKKPLDLTVALGLQPFKLENNKLFCAICPYKAVCLRQLSRHTQSHFWRYTCEACGKSYATNTALRSHIRFSHIGTEKICRKCKRTFSSIEERRKHLQESQKCWSHLCCVCGERFMSWHAKQLHLTECHGVEKKVHVCPECGQIFQERKKYRTHFRLTHTDDNYVCSCCGMKFVTKKNLEEHRVSHTMEKLFPCTVCSKSFPRKKNLIQHMWIHMEHKRFECKLCNKKFNQKVSWKTHMKSYHPELEDFEGKNDNIKLMFSVLTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00111913;
- 90% Identity
- -
- 80% Identity
- -