Mcon011140.1
Basic Information
- Insect
- Mamestra configurata
- Gene Symbol
- -
- Assembly
- GCA_002192655.2
- Location
- NDFZ01084535.1:1852-2304[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-10 2.5e-07 30.9 0.0 2 37 18 52 17 60 0.87 2 2 4.8 1.9e+03 -0.8 0.1 13 22 138 148 131 148 0.70
Sequence Information
- Coding Sequence
- ATGCCTTTAACATATAAGAGGAAAAGTGGAGTATGTAGAGGAGAATGGACAGAAAGAGCATTAATTGATGCTTTTCAAGCTTTTTCTAATGGAATGGGTATCAATGAAGCAGCAAAAACATTTGGGATACCTAAAACTACATTTAAACGAAGACTTGCAAAAAATTCCTTGACTAAAAGCGATGTTCTCGGTCCCAGTGGTATACTGCTGCCTGAAAATGAGAAGAAGATCGTCGTacacattaaaaaattacagaaaagtGGGTTTACGCCATCAAGAGAAACAGTGCGTAAAATGGCATATAATTTAGCGGAAAGACTTCATATTAAACATAACTTTAATCACGAAAAGAAAATGGCGGGAAATGGGTGGTTACAAAGCTTTCTTAGACGAAACAATGAACTTTCAATCCGGCAGTCAGAAGGTGTCTCTGTGGCCAGGGCTAAGGGATGA
- Protein Sequence
- MPLTYKRKSGVCRGEWTERALIDAFQAFSNGMGINEAAKTFGIPKTTFKRRLAKNSLTKSDVLGPSGILLPENEKKIVVHIKKLQKSGFTPSRETVRKMAYNLAERLHIKHNFNHEKKMAGNGWLQSFLRRNNELSIRQSEGVSVARAKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00383562;
- 90% Identity
- iTF_00726249;
- 80% Identity
- iTF_00383562;