Clig019528.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990976.1:10584941-10585405[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-10 2.8e-07 30.8 0.0 2 37 18 52 17 60 0.87 2 2 4.6 2.1e+03 -0.8 0.1 13 22 138 148 131 148 0.70
Sequence Information
- Coding Sequence
- ATGCCTTTAACATATAAGAGGAAAAGTGGAGTATGTAGAGGAGAATGGACAGAAAGAGCATTAATTGATGCTTTTCAAGCTTTTTCTAATGGAATGGGTATCAATGAAGCAGCAAAAACATTTGGGATACCTAAAACTACATTTAAACGAAGACTTGCAAAAAATTCCTTGACTAAAAGCGATGTTCTCGGTCCCAGTGGTATACTGCTGCCTGAAAATGAGAAGAAGATCGTCGTACACATTAAAAAATTACAGAAAAGTGGGTTTACGCCATCAAGAGAAACAGTGCGTAAAATGGCATATAATTTAGCGGAAAGACTTCATATTAAACATAACTTTAATCACGAAAAGAAAATGGCGGGAAATGGGTGGTTACAAAGCTTTCTTAGACGAAACAATGAACTTTCAATCCGGCAGTCAGAAGGTGTCTCTGTGGCCAGGGCTAAGGGGATGAATAAAGAATAA
- Protein Sequence
- MPLTYKRKSGVCRGEWTERALIDAFQAFSNGMGINEAAKTFGIPKTTFKRRLAKNSLTKSDVLGPSGILLPENEKKIVVHIKKLQKSGFTPSRETVRKMAYNLAERLHIKHNFNHEKKMAGNGWLQSFLRRNNELSIRQSEGVSVARAKGMNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00952642; iTF_00726249; iTF_00383563; iTF_00850576;
- 90% Identity
- iTF_00726249;
- 80% Identity
- iTF_00952642; iTF_00383563;