Mbra015903.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- JRKL
- Assembly
- GCA_905163435.1
- Location
- LR991002.1:7009549-7010382[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-08 3.1e-05 24.3 0.1 11 40 25 53 20 56 0.86 2 2 9.8 3.9e+03 -1.6 0.0 21 32 109 120 108 122 0.87
Sequence Information
- Coding Sequence
- ATGCCCAGACaacgtataaaaataacttcaagaGGCGAGTGTGATATAACTCAGTACGAAAATGCGTATGAAGAAGTCAAAAAAGGGACTTCTTTACGAAAAGCTGCAGAGATGTACGGAGTTCACCATTCTTCTCTTCTGCGATACAAGAAAAAAAGAGATGCAGCGATCGAAGAAGGTAACCAGGCTGATGTTAGTATGGGGTATGTAGCCCACAACCGAGTATTTACCCCTGACCAGGAAtttaaactgtcaaaatatttgatCCGCTGTGCGGATATTTACTTTGGTCTATCTGTCAAGGAAGTAAGAAAATTAGCATTCCAGCTCGctgtcaaatataatttaaacacaCCTACGTGGAACGAAAATCAGGTTGCCGGAGAAGAGTGGTTTCGCTCTTTTATGAGAAGAAATGTGGAATTGTCGGTGCGCACAGCTCAGGCAACCAGTCTCTCCAGGGCAACAAGTTTTAACAAGACCAACGTGGATGCTTTTTACGATAACTTACAAGCTGTCCTGGACCGTGACAACTTTGAACCACAAGACATCTACAATGTTGACGAGACGGGCGTAACAACTGAACAAAAGCCCGACAGAGTTGTGGCAAAGCGTGGAACACGACAGGTAGGAGCTGTCACCTCTGCCGAACGTGGGACGTTAGTCACACTAGCCTTTGCGGCAAACGCGTTGGGCAATGCGATTCCCCCAATGTTAGTGTTTCCAAGGGTTCGATACCAAGATCATTTTATTAGAGATGGTCCAGTGGGTTCTATTGGAACTGCCAACCCATCAGGCTGGATGCAAGACGAACTATTTGTTGAGTTTCTGTAA
- Protein Sequence
- MPRQRIKITSRGECDITQYENAYEEVKKGTSLRKAAEMYGVHHSSLLRYKKKRDAAIEEGNQADVSMGYVAHNRVFTPDQEFKLSKYLIRCADIYFGLSVKEVRKLAFQLAVKYNLNTPTWNENQVAGEEWFRSFMRRNVELSVRTAQATSLSRATSFNKTNVDAFYDNLQAVLDRDNFEPQDIYNVDETGVTTEQKPDRVVAKRGTRQVGAVTSAERGTLVTLAFAANALGNAIPPMLVFPRVRYQDHFIRDGPVGSIGTANPSGWMQDELFVEFL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00771856;
- 90% Identity
- iTF_01031083;
- 80% Identity
- -