Basic Information

Gene Symbol
stc
Assembly
GCA_963924605.1
Location
OZ004600.1:50014138-50017716[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 2.5e+04 -4.2 1.6 15 19 398 402 397 402 0.81
2 14 0.16 2e+03 -0.6 0.4 4 10 431 437 430 437 0.95
3 14 1.3e-06 0.017 15.6 13.2 1 19 444 461 444 461 0.93
4 14 0.16 2.1e+03 -0.6 0.5 5 10 486 491 486 492 0.95
5 14 5.8e-05 0.73 10.4 9.4 1 19 497 515 497 515 0.93
6 14 2.6e-08 0.00032 21.1 18.2 1 18 555 572 555 573 0.99
7 14 1.8e-06 0.023 15.2 14.0 4 19 620 635 613 635 0.87
8 14 1.4 1.7e+04 -3.6 2.0 5 10 664 669 664 669 0.93
9 14 0.0066 83 3.8 9.6 1 11 675 685 675 697 0.91
10 14 1.4e-09 1.7e-05 25.2 12.0 1 19 702 720 702 720 0.98
11 14 2 2.5e+04 -4.1 1.9 6 10 749 753 748 754 0.52
12 14 0.00038 4.8 7.8 8.1 10 19 767 776 765 776 0.93
13 14 7.1e-08 0.00089 19.7 15.4 1 18 812 834 812 835 0.86
14 14 0.0051 64 4.2 16.6 1 18 841 859 841 860 0.89

Sequence Information

Coding Sequence
ATGTCGTattgggaccctaattatgtAGAAACTTTTGGAAATGTTCACACTGAATATGGAGCTAATTCTTATGAATATAATAATTTACCATCTGGAACTGTAAATCCATATTTTGATAACACCAGCAGGAATCATGGTTCACAGGTAGATGAAATCTACAACCCACAATGTATAGATTGTAAAAGGAATATTTGCAACATTCATTATAAAACCAGTAGTAACCATACAGCTATGGCTCAAGCAAATACATCGCATCGAGAAAGAGATACATTTGATGTAAATTCTGCAACTGTATTAAATTCGAACTTAACGCCATTAGCTAAAGAATTTACACCCAGCACAAGTAATAGGTCTGTAAGTGCTGTATATGATGATCGAAGTAAAAAACATGGTGCAGTTAGAAGAAATACCTACTGGAACAAAGAGGTAAGGTATAACAGAAGTGATCATAAACAGTATAACGTTACTTATGACGGAAGCGAAAAcaaatttgaaagaaataaaaaagagcgtaataattataaatttggtCAACCCAATAAtggttttaaagattttaacaaaagtagaGAACAAAATCAAGCTTTGCAACAAACAAGGGCATTTTTACAGCAAGTAAAAAATGTAGAACCTAGTAAAAGTGAAAGTGATGAACAGTTCAATCCgaattttacttcaaatattGAACCTGCTGGTAGCAGTAACTTCAATAGCAATGGAAAATATGATAATAGCAGAAAAAACACCTCTGATTCATTTCGCTCTGGTAATTATGGgagaaataattataataatcgccgaaagaattacaaaaataattattacgatGGTTTTCAAGTTGAAAAAAGATTTGAAGAAGTtagaaattcgaatttcggtgggtttgataaaaagaaaagtgATTATTACAACGACGAGAAAAATTACGATGGAGAAAAAAGACGAGCTTACAATGAGCCAcatcaaaaaaagaaatttggatttcaaaattttaaaaagaaatTGGATGCTGCATCTCAAAGAGAACGTCTTCAACAACTCGTTGAGTGTAGGCTTTTGGAATGTTTAGTTTGTTGTGAAAAGTTGCGACATACAGATCAAATTTGGTCATGTAAACAGTGTTATCATATCTTACATCTGCAGTGCACTAAGCAGTGGGCTGAATCGTCGAAATTAGATTCTGGATGGAGATGCCCAGCGTGTCAAAATGTATATCAAGATGTGCCAacacaatatttttgttactgtACTAAGCAAATAAATCCTGCTTTGGATCCTAATGAAATTCCACACAGTTGTGGACAAATTTGTACTCGTAAGGGTCGCTCTTGTTCTCATAAATGCACCATGATTTGTCATCCAGGGCCTTGTCCTGATTGTAGTATTATGGTACCTCGTTCTTGTGGATGTGGTGCTACAAAACCAACTGTTAAATGCAGTTCGACGGTTCCTATAACATGTCAAAAAATATGTGGAAAGGCATTATCTTGTACACTTCATAAATGTGACAGGAAGTGTCACGAAGACAGTTGTGACGAATGCACCGAAGATTTGAAACAAGAATGCTATTGTGGAAAACAAGGTCGTAAGATTAAATGCTCGTTTGATGCTCATGGGTGTACTGAATACGAATGTGGCGATACttgtgataaattattaaaatgtggCAATCACAAGTGTGAACTGAAGTGTCATGTCGGACCCTGTGATCCTTGTTGTTGGTCTCCAGAAGTGATAACAACTTGTCCTTGTGGACAAACTAAACTTACAGAACATCGAAAGTCATGCCTTGATTTGATTCCTTGCTGTGAtaagGTTTGCAATAAAGCATTGTTGTGTGGTCAGCCTAGTGCTCCTCATCGCTGTAAAGCTAACTGTCATGAAGGACCATGCCCAGTTTGTCCTCTTAATACAATGATACGATGTCGTTGTGGTCATATGGATAAAGAAGTTTCTTGTTCGGTAGTTACTACAAAAGCAGATGATGCTCGTTGtgaaaagaaatgcacaaagaaACGCCTGTGTGGAAAACATAAATGTAATCAATTCTGTTGTATTGAAGTAGATCACATTTGCCCATTACCTTGCAATCGTTCGCTTTCATGTGGTCAGCACCGATGTGAATTAACATGTCATAAAGGCCGTTGTACCCCCTGTTGGCGTACTAGTTTTGAAGAGTTATATTGTGAATGTGGTTCTACTGTACTGTATCCACCTGTGGCTTGTGGAACCAGACCTCCTCCTTGTGACCAACCTTGTTCAAGACTTCGTTCTTGCGATCACGAAGCTCTTCATAATTGCCATACCGGTTCTTGCCCACCGTGTACTGTTCTTTGTAAACGGTGGTGTTATGGTCATCACGAGCAGCGCTCTACAATTCAATGCCATCAAGAGAGCTTTAGTTGTGGCTTACCTTGTGGACTTAACATGCCGTGTGGAAAACATAAATGCAATCAGCTCTGCCATACAGGTCCCTGTAAAGTTCTCTGTACACAACCGTGTACGGAATTAAGGCCTATTTGTGGACATCCTTGCAGTCAACCTTGCCATACACCTCCATGCCCAGAAACAAATTGCAAGCATTCTGTGCAAGTTACTTGCCAATGTGGACTGCGTAAGAGTAATCGAGTTTGTATCGATCTTGCAGGGGAATATGAAAATTTAGCTATGTCACAACTTGTGTCAACTATGGAAGAAATGCAACTTGGACGTGCTATCGATGTGACTAATGTTATGAACGGTCAAAAGAAAACAGTAGGATCACTTAAAATTTTAGAGTGCAATGATGAGTGTCGTTTGGTGGAAAGAAATAGAAGACTAGCAATAGGTTTGCAAATTCGTAATCCAGATTTAAGTTCAAAGTTAGCACCGAGGTATTCAGATTTTATGCGCAATTGGGCTAAAAAAGATCCCAAATTTTGTCAACAAATTCATGACAAATTGACAGAATTAGTACAATTGGCAAAGCAAAGCAAACAAAATTGTCGTTCGTATTCATTTGATACAATGAACAGAGATAAACGCCATTTTGTTCACGAGTATTGTGAACATTTTGGCTGCGATAGTGTAGCTTACGATCCCGAACCTAATCGCAATGTTGTAGCTACAGCATCTAAAGATAAATCGTGGTTACCTAGTTACAGCTTATTGGGTGTTATTCAAAGAGAAAACGGTCATCGCAAAGTTCCAGGACCACAACAACTTGAGAAAGGATTAACTTCTAAGTCTGAAACAGTTGCTTTAAAACTACATGGACGAGCTCCTAGACCAACTACTCCTCCGGGAGAGTATGTGGATTATTTTAACGATCCACCCGAATAA
Protein Sequence
MSYWDPNYVETFGNVHTEYGANSYEYNNLPSGTVNPYFDNTSRNHGSQVDEIYNPQCIDCKRNICNIHYKTSSNHTAMAQANTSHRERDTFDVNSATVLNSNLTPLAKEFTPSTSNRSVSAVYDDRSKKHGAVRRNTYWNKEVRYNRSDHKQYNVTYDGSENKFERNKKERNNYKFGQPNNGFKDFNKSREQNQALQQTRAFLQQVKNVEPSKSESDEQFNPNFTSNIEPAGSSNFNSNGKYDNSRKNTSDSFRSGNYGRNNYNNRRKNYKNNYYDGFQVEKRFEEVRNSNFGGFDKKKSDYYNDEKNYDGEKRRAYNEPHQKKKFGFQNFKKKLDAASQRERLQQLVECRLLECLVCCEKLRHTDQIWSCKQCYHILHLQCTKQWAESSKLDSGWRCPACQNVYQDVPTQYFCYCTKQINPALDPNEIPHSCGQICTRKGRSCSHKCTMICHPGPCPDCSIMVPRSCGCGATKPTVKCSSTVPITCQKICGKALSCTLHKCDRKCHEDSCDECTEDLKQECYCGKQGRKIKCSFDAHGCTEYECGDTCDKLLKCGNHKCELKCHVGPCDPCCWSPEVITTCPCGQTKLTEHRKSCLDLIPCCDKVCNKALLCGQPSAPHRCKANCHEGPCPVCPLNTMIRCRCGHMDKEVSCSVVTTKADDARCEKKCTKKRLCGKHKCNQFCCIEVDHICPLPCNRSLSCGQHRCELTCHKGRCTPCWRTSFEELYCECGSTVLYPPVACGTRPPPCDQPCSRLRSCDHEALHNCHTGSCPPCTVLCKRWCYGHHEQRSTIQCHQESFSCGLPCGLNMPCGKHKCNQLCHTGPCKVLCTQPCTELRPICGHPCSQPCHTPPCPETNCKHSVQVTCQCGLRKSNRVCIDLAGEYENLAMSQLVSTMEEMQLGRAIDVTNVMNGQKKTVGSLKILECNDECRLVERNRRLAIGLQIRNPDLSSKLAPRYSDFMRNWAKKDPKFCQQIHDKLTELVQLAKQSKQNCRSYSFDTMNRDKRHFVHEYCEHFGCDSVAYDPEPNRNVVATASKDKSWLPSYSLLGVIQRENGHRKVPGPQQLEKGLTSKSETVALKLHGRAPRPTTPPGEYVDYFNDPPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00950398;
90% Identity
-
80% Identity
-