Basic Information

Gene Symbol
stc
Assembly
GCA_950108345.1
Location
OX467285.1:34574645-34578372[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 2.1e+04 -4.2 1.6 15 19 393 397 392 397 0.81
2 14 0.083 8.6e+02 0.3 0.5 4 10 426 432 425 432 0.96
3 14 2.3e-06 0.024 14.9 12.7 1 19 439 456 439 456 0.93
4 14 0.35 3.6e+03 -1.7 1.5 5 10 481 486 481 486 0.96
5 14 0.00032 3.3 8.0 11.7 1 19 492 510 492 510 0.93
6 14 1.3e-09 1.4e-05 25.2 11.7 1 19 550 568 550 568 0.97
7 14 5.3e-05 0.54 10.5 12.9 4 19 615 630 608 630 0.87
8 14 1.4 1.4e+04 -3.6 2.0 5 10 659 664 659 664 0.93
9 14 0.0065 67 3.8 9.6 1 11 670 680 670 692 0.91
10 14 5e-10 5.2e-06 26.6 11.2 1 19 697 715 697 715 0.98
11 14 1.9 2e+04 -4.1 1.9 6 10 744 748 743 749 0.52
12 14 0.00053 5.5 7.3 7.2 10 19 762 771 760 771 0.93
13 14 1.3e-07 0.0014 18.8 15.8 1 17 807 824 807 829 0.84
14 14 0.0044 45 4.4 17.2 1 18 836 854 836 855 0.92

Sequence Information

Coding Sequence
ATGTCGTATTGGGACCCTAATTATGTAGAATCTTTTGAAAACGTTCATTCTGAATATGGATCTAATTCTTACGAATATATTCATTTACCATCTGGTACTGTGAATGCATATGTTGATAGCTCTAGCAGGAGCCATGGTTCACAGGTAGGCGAGATCTACAGCCAACAGTGTGCAGATTGTGCAAGGAGTGTTTGTAACGTTCATTATAAAAGCACTAGTACCGGTACAACCATGGATCAACCAAATACGTCTCATATTGGAGATATAAATTCTGCTACTGTATTAAACTCGAACTTAACGCCATTGGCTAAAGAATTTACACCCAGCGCAAGTAATAGGTCTGTAAATGCAGGGTATGACGatcgaaataaaaaacatGGAGCAGTTAGAAGAAATACATACTGGAATAAAGATGTAAGACATAATAGAAGCGATCACAAACAGCCTAATGTGAATTACGATGTAAGTGATAACAAATATGAAAGAAATAAGAAAGAgcgtaataattataagtttggACCACCTAATAATAGTTTCAaagattttaacaaaagtagaGAACAAAATCGAGCTTTGGAACAAACTAGGGCATTTTTACAGCAAGTGAAAAATTTAGAACCTAATAAAAGTGAAAACGAGGAACAGTTTAATACcaattttacttcaaatatTGAAACTGAAAGTAGTGGCAATTCTAATAGCCacggaaaatattttaataccagAAAGAATACTCCGCATTCATTTCGCTCCGGTGATTACGGCAGAAGTAATTATAATCGCCGcaagaattacaaaaataattattatgatgGCTTTCAAGTCGAAAAAAGATTTGAAGAAGTTAGAAACTCAAATTATGTTGGTTTTGATAAGAAAAAAGCCGATTACTACaatgaagagaaaaattatgaGGGAGAAAAGAGGCGAGTGTACAATGAACCACATCAAAAGAGGAGATTTGGTTTTcagagttttaaaaagaaatTGGATGCAGCATCTCAAAGAGAACGACTTCAACAACTAGTTGAGTGTAGGCTTTTAGAATGTTTGGTTTGTTGCGAAAAGTTGAGACACACAGATCAAATTTGGTCCTGTAAACAGTGCTATCATATCTTACATCTGCAATGCACCAAGCAGTGGGCCGAGTCTTCTAAATTAGACGCCGGTTGGAGATGCCCAGCTTGTCAAAATGTATATCAAGATGTGCCAatgcaatatttttgttactgCGCTAAGCAAATAAATCCCGCTTTGGACCCTAATGAAATTCCGCACAGTTGTGGACAAGTTTGTGCTCGGAAGGGTCGCTCATGTTCTCATAATTGCACAATGATTTGTCATCCAGGTCCTTGTCCCGATTGTAGCATTATGGTACCCCGTTCTTGTGGATGTGGTGCTACAAAACCTATAGTTAAATGCAGTTCTACTATTCCTATAACGTGTCAAAAAATTTGCGAAAAGTCTTTATCTTGTACACTGCACAAGTGCGACAAGAAGTGTCACGAAGAGAGTTGTGGCGAGTGTACAGAAGATTTGAAACAAGAATGCTATTGCGGAAAACAAGGTCGAAAGATCAAATGCTCATTCGACGCCCATGGTTCTAAAGAATACGAATGTGGAGATACTTGTGATAAGTTACTAAAATGCGGCAATCACAAGTGTGAATTGAAATGCCACGCTGGACCATGTGATGCTTGCCGTTGGTCCCCAGAAGTAATAACAACTTGTTGTTGTGGACAAACTCAACTTACGGAACATCGAAAGTCATGCCTCGATTTGATTCCGTGCTGTGATAAGgtttGCAATAAAGCATTGTTTTGCGGTCAACCTAGTGTTCCTCATCTCTGTAAAGCTAATTGCCACGAAGGACAGTGTCCAGTTTGTCCTCTCAGTACGATGATACGATGTCGTTGTGGTCACATGGATAAAGAAGTTTCTTGCTCTGTCATCACTACGAAAGCCGATGACGCTCGTTGCGAAAAGAAATGTACAAAGaaacgcCTGTGTGGTAAACATAAATGTAATCAGTTTTGCTGTATAGAGGTAGACCACATTTGCCCTTTACCTTGTAATCGTTCGCTTCCATGTGGTCAACACCGATGCGAATTAACTTGTCACAAAGGACGTTGCGCCCCCTGTTGGCGCActagttttgaagaattataCTGCGAATGTGGTTCTACTGTACTATATCCACCCGTGGCTTGTGGAACTAGACCTCCTCCTTGCGATCAACCTTGTTCGAGACTTCGTTCCTGCGATCACGAAGTTCTTCATAATTGCCATACCGGTCTATGCCCACCATGTACCGTACTTTGTAAACGGTGGTGCTATGGTCGTCACGAACAGCGTTCTACTATTCAATGTCATCAAGAAAGCTTTAGTTGTGGCTTACCTTGTGGACTTAACATGCCTTGCGGAAAACATAAATGCAATCAGCTCTGCCACACGGGTCCGTGTAAAGTTCTCTGTACACAACCGTGTATCGAATTAAGACCCGTGTGTGGACATCCTTGCAGTCAGCCGTGTCATACGCCTCCATGCCCGGAAACGTCTTGTAAGCATTCCGTGCAGGTTACGTGTCAATGTGGGCTGCGTAAAAGTAATCGAGTTTGTATCGATCTTGCGGGAGAATATGAAAACTTGGCCATGTCACAACTCGTTTCGACTATGGAAGAAATGCAACTTGGGCGTGCGATCGATGTGGCTAACGTTATGAATGGCCAAAAGAAAACAGTAGGAACACTCAAGATaTTAGAGTGCAACGACGAATGTCGCTTGGTCGAAAGGAATAGAAGATTAGCGATTGGTTTGCAAATTCGCAATCCAGatttaagttcaaaattaGCACCGAGGTATTCAGATTTTATGCGTAATTGGGCTAAGAAGGATCCTAAATTTTGTCAACAAATTCACGAGAGATTGACAGAATTGGTACAATTAGCGAAGCAAAGcaaacaaaattgtcgttCGTATTCGTTCGAAACGATGAATAGAGATAAGCGCCATTTTGTTCACGAGTATTGTGAACATTTTGGCTGCGATAGCGTAGCTTACGATCCAGAACCTAACCGCAACGTTGTAGCTACGGCATTTAAGGACAAATCGTGGTTGCCTAGTTACAGCTTATTGGGCGTCATCCAGAGAGAAAATGGTCATCGCAAAGTTCCAGGACCGCAACAACTCGAGAAGGGCTTAACTGCAAAGTCCGAAACTGTTGCTTTAAAACTTCATGGACGAGTTCCTAGACCAACTACTCCCCCGGGAGAATATGTGGATTATTTTAACGATCCACCCGAATAA
Protein Sequence
MSYWDPNYVESFENVHSEYGSNSYEYIHLPSGTVNAYVDSSSRSHGSQVGEIYSQQCADCARSVCNVHYKSTSTGTTMDQPNTSHIGDINSATVLNSNLTPLAKEFTPSASNRSVNAGYDDRNKKHGAVRRNTYWNKDVRHNRSDHKQPNVNYDVSDNKYERNKKERNNYKFGPPNNSFKDFNKSREQNRALEQTRAFLQQVKNLEPNKSENEEQFNTNFTSNIETESSGNSNSHGKYFNTRKNTPHSFRSGDYGRSNYNRRKNYKNNYYDGFQVEKRFEEVRNSNYVGFDKKKADYYNEEKNYEGEKRRVYNEPHQKRRFGFQSFKKKLDAASQRERLQQLVECRLLECLVCCEKLRHTDQIWSCKQCYHILHLQCTKQWAESSKLDAGWRCPACQNVYQDVPMQYFCYCAKQINPALDPNEIPHSCGQVCARKGRSCSHNCTMICHPGPCPDCSIMVPRSCGCGATKPIVKCSSTIPITCQKICEKSLSCTLHKCDKKCHEESCGECTEDLKQECYCGKQGRKIKCSFDAHGSKEYECGDTCDKLLKCGNHKCELKCHAGPCDACRWSPEVITTCCCGQTQLTEHRKSCLDLIPCCDKVCNKALFCGQPSVPHLCKANCHEGQCPVCPLSTMIRCRCGHMDKEVSCSVITTKADDARCEKKCTKKRLCGKHKCNQFCCIEVDHICPLPCNRSLPCGQHRCELTCHKGRCAPCWRTSFEELYCECGSTVLYPPVACGTRPPPCDQPCSRLRSCDHEVLHNCHTGLCPPCTVLCKRWCYGRHEQRSTIQCHQESFSCGLPCGLNMPCGKHKCNQLCHTGPCKVLCTQPCIELRPVCGHPCSQPCHTPPCPETSCKHSVQVTCQCGLRKSNRVCIDLAGEYENLAMSQLVSTMEEMQLGRAIDVANVMNGQKKTVGTLKILECNDECRLVERNRRLAIGLQIRNPDLSSKLAPRYSDFMRNWAKKDPKFCQQIHERLTELVQLAKQSKQNCRSYSFETMNRDKRHFVHEYCEHFGCDSVAYDPEPNRNVVATAFKDKSWLPSYSLLGVIQRENGHRKVPGPQQLEKGLTAKSETVALKLHGRVPRPTTPPGEYVDYFNDPPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00951474;
90% Identity
-
80% Identity
-