Mser002151.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malthinus seriepunctatus
Gene Symbol
-
Assembly
GCA_963924605.1
Location
OZ004600.1:30997929-31000792[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.3e-05 0.00093 20.0 2.3 1 23 142 164 142 164 0.99
2 14 0.002 0.14 13.2 5.8 2 23 171 192 171 192 0.98
3 14 4e-05 0.0028 18.5 3.3 1 23 202 224 202 224 0.97
4 14 0.00024 0.017 16.0 4.2 2 23 295 317 294 317 0.97
5 14 0.0016 0.12 13.4 5.6 1 23 387 409 387 409 0.96
6 14 2.7e-05 0.0019 19.0 0.7 1 23 415 438 415 438 0.95
7 14 1.9e-06 0.00014 22.6 1.1 1 23 443 465 443 465 0.98
8 14 6.9e-07 4.8e-05 24.0 2.5 2 23 475 496 474 496 0.97
9 14 2.3e-07 1.6e-05 25.5 1.1 1 23 503 525 503 525 0.97
10 14 2.7e-05 0.0019 19.0 1.6 3 23 537 557 535 557 0.92
11 14 0.00095 0.067 14.2 5.2 1 23 563 585 563 585 0.99
12 14 1.1e-05 0.00079 20.2 1.8 1 23 591 613 591 613 0.96
13 14 2.1e-07 1.4e-05 25.7 0.3 1 23 619 641 619 641 0.99
14 14 0.00059 0.041 14.8 0.2 1 23 647 671 647 671 0.92

Sequence Information

Coding Sequence
atgATTAGCAAAGAAACTGCAATGGTTATGCAAAAAATTTGTAGATCATGTATGTGCGAAAGCGCCGAAATGCGTAGCGTGTTTTCCACCAAAGATGCTCAAGAAGGACAAACTTTAAACCTTGCTGATATGTTAATGGCTTGCACATCTATTCAAATTACATCAGACGACGGTTTACCTGTACAATTGTGTTTAACTTGTGAAATTAAGCTCGATTCTGCATTTGAATTTAAACAACAGTGTGAAAGAACTGATACAACTCTTCGTGAGCTTACAAATCAGCCTGTACCTAAACGTTCAATTAAAGAAGAGTCTTATGATATTGTAGTACAGCCCGACTTGGATCCTGCAGATTTATATGCTTCAGATTCGGATAGCAGTCGAGAGACAAAAAAGATTAAAAGTTCAAAAGATTCCAACATTTTCACATGTAGTTATTGTCAAAAGGTTTTAAGAACAAAGAAAGGGTTAAACATTCACCAAAGAcgacatacaggtgaaaagttACGGACTTGTCATCTTTGTCAAGCTAATTTTACTCGAACTAACCACCTTAGAAGACATCTTGAAACGCATAATCGAAATAAACAACCAGTTACATCTCATACTTGTGGTGAATGTGGAGAAACATTTTCTAAAGCGTATCATTTAGTTAAACACAAAAAAGAGCATAAGTTAGGCGTTATTAACATCAAGAAAGAATCTTTTAATGATTTGGAAGAGAACAATGAAGGTGATGAACAGACACATTTTgatggtgacgaagaagaatttGATGAAAATGATGTAAATAATAAGTCAGCACGAGATAGTTTAAAAGGCGAAACAAGTGAAGACAACCAAAACAAGagttttaaatttgacaaaGAGAAAAAGGTGATGGAATGTGAGTTCTGTGATCGTAAGTTTAAATATAGGAAGAGCTTCATGCATCACATGCAAACTGAGCACGGCATGTCTGATGAAAGTGATGTTCCTCTTAGCACTTACGTTACAAAACCAAGTGATATCAAGAATGAAATTGCTGAGCCAGAACCTGCAGTTGTACTTATGGAAACAAATAATGATCCCAAAGATGAAAGTGGTGAAAATTCAATTGATGGAATAGAAAGTTTAGATGACACTGATTTATTAGTACCAGCAACGAATAGAAAGATGCACAGTTGTCATGTGTGTGAATCTAAATTTGCTCGTGCAAACCACTTAACGAGACACATGACATTACATAGAGCTGTTCTTATACATAAATGTGATAGGTGTGATAAAGCCTTTGCAACACCTGAATATTTAGCCAAGCATACCCAAGAAGATCACATCGATAAACCTTATGTTTGTACAATGTGTAATAAACCTTTTAGCCGTGGTGAACACCTCATACGTCATTTGAAAGTACACAATAGCAATGGTcctgaagaaaatttaaaatgttctatttgtgagaAAACATTTAGCAGATCTGATCACCTTGCGCGGCACACTAAAATTCATTTGCAACAAGATAAAAGGCATGTTTGTTCTGAATGTGGAAAGGCTTTTAATagaatagataatttaaaaacacatCAAAGAATACATGCTGGCCTCAAAGATACTTCTAGACTTCATTTATGCATCTATTGTGGTAAAGAGTTTAACAACTCGAGCAATATGATTGTTCATATGAGACGTCATACTGGAGAAAGACCATATAAATGCTCTATATGCAGTAAAGGATTCCCAAGATCTCATGATTTAAAGTGTCATGAACGTACACACTCGGGGGAAAAACCTTATTTATGTACTTTATGTGGTAAATCGTTTAACAAGAGTAATAAATTGCTAAGACATACAAGAGTTCATACTGGAGAAAGACCATATGTATGCAATTtatgtggacgagcctttacaCAATCAAATGATCTTGCTCTTCATATGCGAAGACATACAGGTTCAAGACCTTATGCATGCGGCGTTTGTTCAGCTCGATTTATACAGTCGGGTCAACTTAAAACTCATCGGCGATCGACAGGTCACTGGATGGAAACTCAACCAGATCTCAAAGGTGGTCACAGAGTCGAATTAGTAACACCAATAACAGATCCTGTgcctattaaatttaaaacgcacGGAAAAACTCAGTTAAAATTGGAATCTGATGAACTTAAAGAACCTCGTATTTTAGGCCACAGTGTAGGCATTATGGGAAATATAAGCATCCAAAATAATCCTTCAGAATCGTCCCAACCTATTATAATTGAAAGTACAAAACTACTTCAACAATTTCAAAGTGCTGGTTTCAATGTAGGCCTCGCTTCGGTTATTAATGCAGCTGGTTGTTCGAAcgataaatttaaaactgatgTAGACAATTATGGACAACTTGTACATGAAAGCTCTACAGAAGAGAAAATGGAAGTTGGCCATAATAGTGAAGCTGCATTTCCAACAGTGAGTGCTTCGGCTACATTTTCTAGCCCTGAACGATTCAATTATCAAAATTACGGTTAA
Protein Sequence
MISKETAMVMQKICRSCMCESAEMRSVFSTKDAQEGQTLNLADMLMACTSIQITSDDGLPVQLCLTCEIKLDSAFEFKQQCERTDTTLRELTNQPVPKRSIKEESYDIVVQPDLDPADLYASDSDSSRETKKIKSSKDSNIFTCSYCQKVLRTKKGLNIHQRRHTGEKLRTCHLCQANFTRTNHLRRHLETHNRNKQPVTSHTCGECGETFSKAYHLVKHKKEHKLGVINIKKESFNDLEENNEGDEQTHFDGDEEEFDENDVNNKSARDSLKGETSEDNQNKSFKFDKEKKVMECEFCDRKFKYRKSFMHHMQTEHGMSDESDVPLSTYVTKPSDIKNEIAEPEPAVVLMETNNDPKDESGENSIDGIESLDDTDLLVPATNRKMHSCHVCESKFARANHLTRHMTLHRAVLIHKCDRCDKAFATPEYLAKHTQEDHIDKPYVCTMCNKPFSRGEHLIRHLKVHNSNGPEENLKCSICEKTFSRSDHLARHTKIHLQQDKRHVCSECGKAFNRIDNLKTHQRIHAGLKDTSRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSICSKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCNLCGRAFTQSNDLALHMRRHTGSRPYACGVCSARFIQSGQLKTHRRSTGHWMETQPDLKGGHRVELVTPITDPVPIKFKTHGKTQLKLESDELKEPRILGHSVGIMGNISIQNNPSESSQPIIIESTKLLQQFQSAGFNVGLASVINAAGCSNDKFKTDVDNYGQLVHESSTEEKMEVGHNSEAAFPTVSASATFSSPERFNYQNYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00950080;
90% Identity
iTF_00950080;
80% Identity
-