Mgen026948.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malaya genurostris
Gene Symbol
-
Assembly
GCA_030247185.2
Location
CM058073.1:42950219-42956508[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.12 9.3 8.1 0.7 1 23 155 177 155 177 0.97
2 16 0.021 1.6 10.5 4.6 1 23 182 204 182 204 0.97
3 16 0.00024 0.019 16.6 1.8 1 21 221 241 221 244 0.89
4 16 3.3e-07 2.6e-05 25.6 1.6 1 23 250 272 250 272 0.98
5 16 1.2e-05 0.00095 20.7 4.4 1 23 278 300 278 300 0.98
6 16 0.0012 0.096 14.4 0.4 1 19 306 324 306 327 0.94
7 16 0.00068 0.054 15.2 2.2 1 21 333 353 333 355 0.95
8 16 3.1e-07 2.4e-05 25.7 1.1 1 23 364 386 364 386 0.99
9 16 1.3e-06 0.00011 23.7 0.4 1 23 392 414 392 414 0.98
10 16 9.4e-05 0.0074 17.9 2.9 1 21 421 441 421 442 0.95
11 16 0.00022 0.018 16.7 1.2 1 23 522 544 522 544 0.98
12 16 5.1e-07 4e-05 25.0 1.9 1 23 562 584 562 584 0.98
13 16 0.0014 0.11 14.2 1.6 1 23 591 613 591 613 0.97
14 16 1.8e-05 0.0014 20.1 3.0 1 23 621 643 621 643 0.98
15 16 2.6e-07 2e-05 25.9 0.7 1 23 649 671 649 671 0.98
16 16 0.11 8.6 8.2 0.1 3 23 680 700 678 700 0.97

Sequence Information

Coding Sequence
ATGGCAGAAGATTTATCGATCAATAAAAATAAGATCAGTTCCTCGCACTACGCCAACAACTATATTTGTCGATTGTGCTTAAAAAATGAGTCCCATATGGAGCCACTGTTCTACGCGAATCTATTTCCGAACATACTGCTTACCAAAAAGATATATGACTGCACATCGATACAGATAATTTTTGAGCGCAATCTTCCGATGTTCGTCTGCAAGCTTTGCGCTAACAAATTGGACGAGTACATTCGATTTCGTGAACGTTGTGTCGctaatgatgagtttttaagaaATGCTCTAGCATTTTTCGatgctggccaaaacattatcaAAACGGAACAGGAGCGGGCTCCTTCTCCAATACAAATGCATCAACCTATGGGCCCAATTGATTTCCGCCAAACAAAAAGTGCCATCGAAACAGAATCCGAACAGGCAGAAGATGACGAACCTCTGTATACGGATAAGTTTTCTTGCAATGAATGTCAATTCACCGCAAACGATGAATCCGTAATGCGTAGTCATCAGAAGCTGCACGAAGACAAACCTTATGCGTGCACGCTGTgttcaaagtcgttcaagattcGACAACATTTATTAATCCACAGTCATACACACGTGGATCTACAGCAAACAGCCGAACAAACGATCGACATGAAGCCAACATTCAGTTGCACGAAATGCACCAAAGTTTTTATCAATAGAGGTAACCTGATAAATCACTCGGCTGAATGTCACGGAAACGTGAAAAATTTCAACTGCGAGATTTGCTCAAAATCGTTCAAGTACAACGTTCAACTGAGGATTCACATGAGAACACACTCTGGAGAACGACCCCACACATGCGAAATTTGTCATCGTGGATTTTCTCAGCTTTCGAATCTGAGATCTCACCGTAAGGTCCACTCGAAAGTCAAACCGTACAAATGTCAGCTGTGCCTCAAAAGTTTCACCATGCTAGATAATTTGACGGTACACAGCCTGAAGTGTGTTAAGGATAAATACCGTTGTACGTTGTGCTCGAAGTCATTCGCGAAAGAAGGGAATCTGATCTCGCACTTGCAGTGCCACAGCGAAGGAGTTGTAGAGAAAAACTTCAAATGTGAAATGTGtcctaaaagtttcaaaaataaggAGGATTGGAAACGTCATGTTCGAGTACATACAGgtgaaaaacccTACATCTGCGACATTTGCAATAAAGGTTTCGCTCAAAAGGCAAACCTGTTATCCCATCGTAAAACCCATCTCAAGCCAGAGATCGTATTTAAGTGTGAACACTGCGACAAAGTATGCCGAACGCAGAAACTGTTAGAAATACACCTTCAAAAATGCGGTACAGCTGAAGCGAAAGTTGCCACACCTACTTCTGAGttgccaacaacaacaacgcaaTCTCCGCTGGTGTCTGTACCAGCGACATCCGTTACACCCACATTAGAAGCATTGTCCGACTTACTGCGGTACGAGATTGCTTTGCGCGCTCCGACTGAACTGCAGGAGATGTTGCTGGCCACGATGGAAAAGAAGAAAGTGGCTAAACAAATGGCACCGGTTGGAAACCGCAACTATCGGTGTGAGGTTTGTTTTAAGGTTTATTCACAGTATCCGAGTTTGGTGAAACATCGGAAGTTGCATCTTAAAACACCTCGCTTGCGAACAAAATCTACTGATGCAGATGATCGCCCTTATTATTGTGATATATGCGGAAAGAACTTTAAGTTCAACCGGAATCTAAAGGTTCATATGAAGCTACACACCAAAGCAAATGGTTGCTTCAAGTGCGACAAATGCAGCAGCACATTTGAAGTAGCCGATCAACTGAAACATCATCTACTAGAACATCCCATCGATAtggaaaaaattttcaactgcGAGTATTGTTCAAATACGTTTAAATCTAATGAAGATTTGAAACGACACCGACGATCCCATACAGGTGAACGTCCGTTCAAGTGCGATACGTGTCCGAAGGCGTTTACGCAGCTGTCGAATCTGCGTGCCCACACGAAAATCCACGAGAAAAAGAGAACGGCGTACGGTTGCAACATTTGCCTGCTTGAGTTGGACTCGTTGGAGTCTCTAAATATGCACCTTAGAACGCATCAGTATCAGTTGTTCGAACTTTGCAGGGAAATTAAATAG
Protein Sequence
MAEDLSINKNKISSSHYANNYICRLCLKNESHMEPLFYANLFPNILLTKKIYDCTSIQIIFERNLPMFVCKLCANKLDEYIRFRERCVANDEFLRNALAFFDAGQNIIKTEQERAPSPIQMHQPMGPIDFRQTKSAIETESEQAEDDEPLYTDKFSCNECQFTANDESVMRSHQKLHEDKPYACTLCSKSFKIRQHLLIHSHTHVDLQQTAEQTIDMKPTFSCTKCTKVFINRGNLINHSAECHGNVKNFNCEICSKSFKYNVQLRIHMRTHSGERPHTCEICHRGFSQLSNLRSHRKVHSKVKPYKCQLCLKSFTMLDNLTVHSLKCVKDKYRCTLCSKSFAKEGNLISHLQCHSEGVVEKNFKCEMCPKSFKNKEDWKRHVRVHTGEKPYICDICNKGFAQKANLLSHRKTHLKPEIVFKCEHCDKVCRTQKLLEIHLQKCGTAEAKVATPTSELPTTTTQSPLVSVPATSVTPTLEALSDLLRYEIALRAPTELQEMLLATMEKKKVAKQMAPVGNRNYRCEVCFKVYSQYPSLVKHRKLHLKTPRLRTKSTDADDRPYYCDICGKNFKFNRNLKVHMKLHTKANGCFKCDKCSSTFEVADQLKHHLLEHPIDMEKIFNCEYCSNTFKSNEDLKRHRRSHTGERPFKCDTCPKAFTQLSNLRAHTKIHEKKRTAYGCNICLLELDSLESLNMHLRTHQYQLFELCREIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01471716; iTF_01462296; iTF_01462295; iTF_01525083;
90% Identity
-
80% Identity
-