Mneu025994.2
Basic Information
- Insect
- Malacosoma neustria
- Gene Symbol
- -
- Assembly
- GCA_963693495.1
- Location
- OY856397.1:2022066-2024081[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00078 0.074 14.3 6.9 1 23 52 75 52 75 0.98 2 18 4e-05 0.0038 18.4 1.0 1 23 84 107 84 107 0.96 3 18 0.031 3 9.3 0.6 2 23 120 142 120 142 0.97 4 18 0.0013 0.13 13.6 2.0 1 23 151 174 151 174 0.96 5 18 0.0015 0.15 13.4 1.9 1 23 186 209 186 209 0.96 6 18 1.5e-05 0.0015 19.7 0.6 2 23 242 264 241 264 0.96 7 18 0.00013 0.012 16.8 1.2 2 23 274 296 273 296 0.96 8 18 0.0011 0.11 13.8 0.9 2 20 301 319 300 321 0.92 9 18 0.0022 0.21 12.9 0.3 2 21 326 345 326 348 0.94 10 18 0.017 1.6 10.1 1.1 3 23 358 379 357 379 0.94 11 18 2e-05 0.0019 19.3 4.0 1 23 384 407 384 407 0.94 12 18 0.0051 0.48 11.8 4.7 2 23 419 441 418 441 0.93 13 18 0.00017 0.016 16.4 0.7 1 23 469 492 469 492 0.94 14 18 1.5 1.4e+02 4.0 0.2 2 23 499 519 498 519 0.90 15 18 0.0034 0.32 12.3 1.9 2 23 526 547 525 547 0.97 16 18 2.1 2e+02 3.5 1.3 3 23 555 577 553 577 0.86 17 18 0.0049 0.47 11.8 0.2 1 23 613 635 613 635 0.97 18 18 0.15 15 7.1 2.0 1 23 641 664 641 664 0.96
Sequence Information
- Coding Sequence
- ATGATGATGGAGTCTGCAACCAATGAATACAGTCAACCAGAACCTGCAGTGAAATTAgaacaagaaaataaagaagCTGTTCTTTTAACTTCCGAGAGTGTTATCAATGAAGAACTACCAATGGAACTTATAGAAACTGAAAATACACATAATTACATGTGTAGAATATGCCATCTAGTCTTCAAATCGTCAAAAACTCTATGTATGCATCAACGTAGGAAGCACAAATCATTTAGGAAGTACTTTAACCATATATGTGATTATTGTGGTATGTCGTATGAATCGAAAAACAGTTTAGTTGctcatataaaaagaaaacatgggCCAGATTCAATCCCAGAAGACCTTGAAGAGCGTACATGTGATGTATGCGCGTTAGTTTTTAAAGGTATGAATAGGTTAAGGCTCCATATGCGAAGAAAACATGGTTCCTTCAAAGAATCATTCAAACATGTTTGCGAGGACTGTGGCTTAACATATGAAAAACGTAGAAGTTTGCTCGTAcataaaaaaaggaaacattCAAAAATCATACAGCCAATTTTGAATCAATGGTATAACTGTTTGTTTTGTCCAAAAATTTTTACTAAAAGAGAAACATATGTTAGACATGTGCAACGAAAACATAAGATATCAGAGGAAGAAACCATGAACACCATTTGTGTGAAAAATTTAACTACTGAGTACTTAGAAAGTTGTATAAATAAGTTAACAGGGGAAATTATGTGCAAAGAGTGTCCGCTAGTCTTTTcttcattgaattatttaaagttACATATGAGGAGGAAACATAATGCTTTAAGAGAGAGCTTCAGGCTTAAGTGCAAAGTGTGCAATTTGTCATACGACAGGGTTGAGAGTTTAAAACGTCATGTGCGAAGAAAACATGACGATAGTACTTATTGTGATTATTGTAAGAAAAGTTTTAATACAAGGGAAGCATATATAAGCCATACACATGTGAAATCTATTAGGGAGTGTTCTATTTGTGGACTAATTTTTGCAACGAAAGGGGGTTTGGGGAAACATTTGAGGTGTGCACATAAAATTGAGACTCAGAAGACAGTTTTCTGCAAGATGTGCAACGAAGGTTTTATTGATAAGAGACATTTAAGACCACACGTATTGAGAGTACATTTGAATATGGTTTTCacatgtaattattgtaatagaGTGTTTAAATCAAAAGAAAGTTTCCGCAAGCATGTAATGTTCAAACATAAAGCAGATAACCCATTTGAAAGTCAGACACAGACCTGTGAGCACTGCAATCAAATGTTTAAAGACGAATTTGAGTTGTGCAAACATTTTAATTTGGAGCACAATATTTCGACCAAATCTGAGAACTTTACTGTTCCGAAACTTTTAGAGGTTAAGAAGGAAGAGGTTGAGGTGAAAACGTCATTCCAATGTACAAAATGTCCCGAAGAATATTATTCTTGGGAGAATTTGAAGCTTCATTATGAACAGAATCATCGTGTAATGGAAGACACTCAATGCCAGATATGCGGAGAGTTAGTTCGTGGGAACGAATTAGACAAGCACATTAAGAATCACAGTACATTAGAAGAAATGCAGTGTAGGTATTGTGAATTCAAAACAAATCAACGAGTTAGTTTGACACAGCACATGTTGCGACACAAGAATGCTGCAACACTGAACTGTGACTTTCCATTATGCAGATATAAGACGTTTTATGAAGATGCAATGAAAAAGCACAAACGTAAACATGAAGATCAAGGGGTTAAATTGCAGTGTACTCAATGTCCGTTTCAAACGAtgaataagtatatattaaagTATCATGAAGAAGCTCATGCGACTGGCAATAAGAGGTACAAGTGCGACCAGTGTGACTATGCAACAATATTGCCAGCAAATCTCGTTCAGCACAAATATAAACATTCTTCAGAAAAAAGGTTCAAATGTGAGGTGTGTCCGTTTGCAACTAAGTACAACACGTCTTTACGTTTTCATGTGAAGAAGAAACACTGTGATCTTCCCACTTTACTTTaa
- Protein Sequence
- MMMESATNEYSQPEPAVKLEQENKEAVLLTSESVINEELPMELIETENTHNYMCRICHLVFKSSKTLCMHQRRKHKSFRKYFNHICDYCGMSYESKNSLVAHIKRKHGPDSIPEDLEERTCDVCALVFKGMNRLRLHMRRKHGSFKESFKHVCEDCGLTYEKRRSLLVHKKRKHSKIIQPILNQWYNCLFCPKIFTKRETYVRHVQRKHKISEEETMNTICVKNLTTEYLESCINKLTGEIMCKECPLVFSSLNYLKLHMRRKHNALRESFRLKCKVCNLSYDRVESLKRHVRRKHDDSTYCDYCKKSFNTREAYISHTHVKSIRECSICGLIFATKGGLGKHLRCAHKIETQKTVFCKMCNEGFIDKRHLRPHVLRVHLNMVFTCNYCNRVFKSKESFRKHVMFKHKADNPFESQTQTCEHCNQMFKDEFELCKHFNLEHNISTKSENFTVPKLLEVKKEEVEVKTSFQCTKCPEEYYSWENLKLHYEQNHRVMEDTQCQICGELVRGNELDKHIKNHSTLEEMQCRYCEFKTNQRVSLTQHMLRHKNAATLNCDFPLCRYKTFYEDAMKKHKRKHEDQGVKLQCTQCPFQTMNKYILKYHEEAHATGNKRYKCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00433361; iTF_00432469; iTF_00432474;
- 90% Identity
- -
- 80% Identity
- -