Mneu017891.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malacosoma neustria
Gene Symbol
Ssrp
Assembly
GCA_963693495.1
Location
OY856386.1:14475943-14490783[-]

Transcription Factor Domain

TF Family
HMG
Domain
HMG_box domain
PFAM
PF00505
TF Group
Other Alpha-Helix Group
Description
High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2e-23 2.1e-20 73.7 3.4 1 69 552 618 552 618 0.99

Sequence Information

Coding Sequence
ATGGAATTTCTCGAATACAATGATGTGCAAGCTGAAATTAAAGGCGCTATGGTTCCTGGAAGGCTTAAGATGACTGATCAGAATATAATATTCAAGAACAGTAAAACAGGAAAGGTAGAACAGATATCTGCAAATGATATTGAATTAGTGAATTTTCAAAAGTTTATTGGCTCTTGGGGCTTGAGAGTTTTCATGAAGAATGGTACATTGCACAGATACGGGGGCTTCAAAGATGGGgaACAAGAGAAAGTGGCAAAGTTCTTCAAAGCGAATTACAATAAGGATATGCTGGAAAAGGAACTTTCCTTGAAAGGATGGAATTGGGGTACTGCAAAGTTCAATGGCGCAGTTTTAAGCTTCAATATAGGGTCCAACACAGCATTTGAAATACCTTTGCACTACGTATCACAGTGTAACACAGGCAAGAATGAAGTAACTCTTGAGTTTCATCAGAATGATGACACTCCAATATCTTTAATGGAAATGAGATTCCATATACCGACAAATGAATTAGCAGGTGATATGGATGCAGTGGAAGCGTTCCACCAACAAGTTATGAACAAAGCCAGTGTCATATCAGTTTCTGGAGATGCTATTGCCATCTTTAGAGAACTGCAGTGTCTTACACCTCGTGGTCGTTATGACATCAAAGTGTTCCAAACATTCTTCCAACTCCACGGTAAAACATTTGACTACAAGATACCAATGTCGACAGTATTACGACTGTTCCTGCTACCGCATAAGGATACGAGGCAGATGTTCTTTGTGGTGTCGTTGGATCCACCTATTAAACAGGGTCAAACGAGATACCATTACTTGGTTCTGCTGTTTGGTATCGAAGAAGAGACCAGTTTGGAGCTGCCTTTTACAGAGGAAGAACTACAAGAGAAATATGAAggtaaaataacaaaagaactGTCAGGACCAACTTATGAAGTGTTAGCTAAGATTATGAAGGTTATTATCAATAGAAGAGTTACAGGACCTGGCGATTTCTTGGGCCACCACAAGACGCCGGCCATAGCGTGTTCTTACAAAGCGGCCGCCGGCTACTTGTATCCATTGGAGAAAGGCTTTATATACGTCCACAAGCCCCCAGTGCACATTAGGTTTGAAGAAATCGCCTCCGTCAACTTCGCCAGAGGTGGAGCCTCGTCGACTAAATCTTTCGATtttgaaattgaattgaaatcagGCAGTATACACACGTTCAGCAGCATAGAGAAGGGGGAGTACgataaattatttgattacATCACATCCAAGAAACTGCACGTCAAAAACACTGGGAAGAATGACAAGGCGTTGTACGACGACGACTTCGGCGACTCGGACACGGAGAAGGAGCCGGACGCGTACTTGGAGCGCGTGAAGGCCGAGGCCAAGGAGCGGCAGTCCGACGACAGCGACGGCTCCGACGAGAGCACCGACGAGGACTTCAACCCCGACAAGGCCAACCAGAGCGACGTCGCCGAAGAGTACGATACGAACGCTTCATCGTCGTCAGACTCGGACGCGTCAGGTGCCTCGGAGGGTAGCAAGAAGGAGAAGGAAAAGAAGAAAGATAGGAAACCCAAGAAAGCTATTACAATTCCGGAGTCAGCGCCACGCAAGCGTAAGGAGACGAAGAAGCGCGAGAAGGACTCGAACGCGCCGAAGCGGCCCTCCACCGCGTTCATGCTGTGGCTCAACGAGAACAGGAAGAGCATCGTCGACGAGAACCCCGGCATCAAGGTCACCGAGATCGCCAAGAAGGGCGGTGAGCTGTGGCGCGATCTCAAGGACAAGTCGGAATGGGAAGAGAAAGCTGCGAAAGCGAAAGAAGAATACAACATAGCTATGAAAAAATACAAAGACAGCGGAGCAGCGGACGAGTTCAAGCAGAAGAAGAAGCAAGCggagaaggaaaagaaagcggcAGAGAAGAAGAAGACCGCCCCGCCACCCAAGAAGTCGAAGACGAGTAATACTGGAGCGGGCTCTAGTGGGAAATTTACGAGCAAGGAGTATATAGAGGATGATGACAGTTCTTCCGATTCGGATAATGATAAGAAAAAGAAGGACAATAAGGATagcAAGGATTCGAAGAAAGAAAAAGCGAAGGCATCTTCATCAGAAGCGGCTTCGTCGGGATCTGCCGATGAGAGCGGAAGCGGGAGCGATTGA
Protein Sequence
MEFLEYNDVQAEIKGAMVPGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRVFMKNGTLHRYGGFKDGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNIGSNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPISLMEMRFHIPTNELAGDMDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRGRYDIKVFQTFFQLHGKTFDYKIPMSTVLRLFLLPHKDTRQMFFVVSLDPPIKQGQTRYHYLVLLFGIEEETSLELPFTEEELQEKYEGKITKELSGPTYEVLAKIMKVIINRRVTGPGDFLGHHKTPAIACSYKAAAGYLYPLEKGFIYVHKPPVHIRFEEIASVNFARGGASSTKSFDFEIELKSGSIHTFSSIEKGEYDKLFDYITSKKLHVKNTGKNDKALYDDDFGDSDTEKEPDAYLERVKAEAKERQSDDSDGSDESTDEDFNPDKANQSDVAEEYDTNASSSSDSDASGASEGSKKEKEKKKDRKPKKAITIPESAPRKRKETKKREKDSNAPKRPSTAFMLWLNENRKSIVDENPGIKVTEIAKKGGELWRDLKDKSEWEEKAAKAKEEYNIAMKKYKDSGAADEFKQKKKQAEKEKKAAEKKKTAPPPKKSKTSNTGAGSSGKFTSKEYIEDDDSSSDSDNDKKKKDNKDSKDSKKEKAKASSSEAASSGSADESGSGSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00432193; iTF_00953505; iTF_01264609; iTF_00042625; iTF_01026177; iTF_01094913; iTF_01118305; iTF_01338753; iTF_00425378; iTF_00907042; iTF_01031138; iTF_01246978; iTF_01425058; iTF_00043491; iTF_00374115; iTF_00447139; iTF_00907875; iTF_00906148; iTF_01084260; iTF_01093092; iTF_00071429; iTF_00237573; iTF_00924677; iTF_00171750; iTF_00124263; iTF_00952711; iTF_00041768; iTF_01192712; iTF_01533928; iTF_00040809; iTF_00622825; iTF_00111658; iTF_00123370; iTF_01062794; iTF_01532010; iTF_01063755; iTF_01340107; iTF_00449100; iTF_00810060; iTF_00018157; iTF_00809133; iTF_01029261; iTF_00036718; iTF_00038766; iTF_00375214; iTF_00785198; iTF_01085230; iTF_00850735; iTF_01030224; iTF_00037809; iTF_01094033; iTF_00017330; iTF_00300210; iTF_00301170; iTF_00711858; iTF_00726354; iTF_00831219; iTF_01064659; iTF_01533043; iTF_00758164; iTF_00851796; iTF_00951828; iTF_01230580; iTF_01538740; iTF_00072149; iTF_00172949; iTF_00364021; iTF_00274422; iTF_01527222; iTF_00122391; iTF_00302103; iTF_00445175; iTF_00685431; iTF_01117207; iTF_00120504; iTF_00928697; iTF_01027321; iTF_01439929; iTF_00446138; iTF_01377466; iTF_00273596; iTF_00147453; iTF_00667485; iTF_00745693; iTF_01061885; iTF_00121438; iTF_00177118; iTF_00383646; iTF_01285534; iTF_01441086; iTF_01526014; iTF_01028287; iTF_01119328; iTF_01317285; iTF_00355148; iTF_00934753; iTF_00164358; iTF_01217487; iTF_00933745; iTF_00744627; iTF_00403801; iTF_01178555; iTF_01248124; iTF_00114094; iTF_00771919; iTF_01076498; iTF_01281331; iTF_00957941; iTF_01316344; iTF_00356190; iTF_00113312; iTF_00806722; iTF_00715782; iTF_01147369; iTF_00429002; iTF_00428116; iTF_00433144; iTF_00255897; iTF_01135748; iTF_00156234; iTF_00155290; iTF_00325373; iTF_01134782; iTF_00832997; iTF_00695590; iTF_00985096; iTF_00986088; iTF_01018556; iTF_01143085; iTF_01337742; iTF_01157779; iTF_00195156; iTF_01153974; iTF_01437976; iTF_01438921; iTF_01438922; iTF_00795696; iTF_00887391; iTF_01333818; iTF_00390362;
90% Identity
iTF_00794598;
80% Identity
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