Msep170399.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068371.1:312680555-312689144[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0043 4.6e+02 4.0 0.0 88 137 29 78 2 89 0.55 2 8 0.00064 69 6.7 0.0 85 126 103 144 92 153 0.65 3 8 0.012 1.3e+03 2.5 0.0 94 126 161 193 149 204 0.57 4 8 0.0011 1.2e+02 5.9 0.0 85 126 215 256 206 267 0.63 5 8 0.00023 24 8.2 0.2 91 138 270 317 262 322 0.61 6 8 0.00078 84 6.4 0.1 87 128 336 377 328 392 0.63 7 8 0.00084 91 6.3 0.0 95 136 386 427 368 433 0.59 8 8 0.006 6.5e+02 3.5 0.0 89 111 408 430 403 444 0.76
Sequence Information
- Coding Sequence
- ATGTCTTCTAAGTTTTGCCACTCGAACGACTCAGTGAAGCGCGAGAATACGGCGAATGACACGAATAGACGTATTATCGTAACTATTACAAAATCTTTAGCGCAGTTACCTGTCAAGTATCGCAGCGTTTACATATCTTTATCACAGTTACCTGACAAGTACCGCAGCGTTTACATACCTCTAGCACAGTTACCTGACAAGTACCGCAGCGTTTACATATCTTTAGCACAGTTGGCTGACAAGTACCCCAGCTTACAGGTCAAGTATCGCATCGTCTACATATCTTTATCACAGTTAGCTGGCAAGTACCGCAGCGTTTACATATCTTTAGCACAGTTAGCTGACAAGTATCGCAGCGTTTACATATCTTTAGCACAGTTACCTGACAAGTACCGCAGCGTTTACATATCTTTAGCACAGTTACCTGACAAGTACCGCAGATTACCTGTCAAGTATCGCAGCGTTTACATATCTTTATCACAGTTACCTGACAAGTACCGCAGCGTTTACATACCTCTAGCACAGTTACCTGACAAGTACCGCAGCGTTTACATATCTTTAGCACAGTTGGCTGACAAGTACCCCAGCTTACAGGTCAAGTATCGCATCGTCTACATATCTTTATCACAGTTAGCTGGCAAGTACCGCAGCGTGTACATATCTTTAGCACAGTTACCTGACAAGTATCGCAGCGTTTACATATCTTTAGCACAGTTACCTGACAAGTACCGCAGCGTTTACATATCTTTAGCACAGTTACCTGACAAGTACCGCAGATTACCTGTCAAGTATCGCAGCGTTTACATATCTTTAGCACAGTTGGCTGACAAGTACCGCAGCATTTACATATCTTTAGCACAGTTGGCTGACAAGTACCGCAGCGTTTACATATCTTTAGCACAGTTGGCTGACAAGTACCGCAGCGTTTACATATCTTTAGCACAGTTGGCTGACAAGTACCGCAGCGTTTACATATCTTTAGCACAGTTGGCTGACAAGTACCGCAGCGTTTACATATCTTTAGCACAGTTGGCTGACAAGTACCGCAGCATTTACATATCTTTAGCACAGTTGGCTGACAAGTACCGCAGCGTTTACATATCTTTATCACAGTTACCTGACAAGTACCGCAGCGTTTACTTACCTCTAGCACAGTTACCTGACAAGTACCGCAGCGTTTACATATCTTTAGCACAGTTACCTGACAAGTACCGCAGCGTTTACATATCTTTAGCACAGTTGGCTGACAAGTACCGCAGCGTTTACATATCTTTAGCACAGTTGGCTGACAAGTACCCCAGCGTTTACATATCTTTAGCACAGTTACCTGACAAGTAG
- Protein Sequence
- MSSKFCHSNDSVKRENTANDTNRRIIVTITKSLAQLPVKYRSVYISLSQLPDKYRSVYIPLAQLPDKYRSVYISLAQLADKYPSLQVKYRIVYISLSQLAGKYRSVYISLAQLADKYRSVYISLAQLPDKYRSVYISLAQLPDKYRRLPVKYRSVYISLSQLPDKYRSVYIPLAQLPDKYRSVYISLAQLADKYPSLQVKYRIVYISLSQLAGKYRSVYISLAQLPDKYRSVYISLAQLPDKYRSVYISLAQLPDKYRRLPVKYRSVYISLAQLADKYRSIYISLAQLADKYRSVYISLAQLADKYRSVYISLAQLADKYRSVYISLAQLADKYRSVYISLAQLADKYRSIYISLAQLADKYRSVYISLSQLPDKYRSVYLPLAQLPDKYRSVYISLAQLPDKYRSVYISLAQLADKYRSVYISLAQLADKYPSVYISLAQLPDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -